Human Gene EDARADD (uc001hxu.1)
  Description: Homo sapiens EDAR-associated death domain (EDARADD), transcript variant A, mRNA.
RefSeq Summary (NM_145861): This gene was identified by its association with ectodermal dysplasia, a genetic disorder characterized by defective development of hair, teeth, and eccrine sweat glands. The protein encoded by this gene is a death domain-containing protein, and is found to interact with EDAR, a death domain receptor known to be required for the development of hair, teeth and other ectodermal derivatives. This protein and EDAR are coexpressed in epithelial cells during the formation of hair follicles and teeth. Through its interaction with EDAR, this protein acts as an adaptor, and links the receptor to downstream signaling pathways. Two alternatively spliced transcript variants of this gene encoding distinct isoforms have been reported. [provided by RefSeq, Jul 2008]. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments.
Transcript (Including UTRs)
   Position: hg19 chr1:236,557,680-236,648,008 Size: 90,329 Total Exon Count: 6 Strand: +
Coding Region
   Position: hg19 chr1:236,557,745-236,645,949 Size: 88,205 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:236,557,680-236,648,008)mRNA (may differ from genome)Protein (215 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCHPRDLynxMalacards
MGIneXtProtOMIMPubMedReactomeTreefam
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: EDAD_HUMAN
DESCRIPTION: RecName: Full=Ectodysplasin-A receptor-associated adapter protein; AltName: Full=EDAR-associated death domain protein; AltName: Full=Protein crinkled homolog;
FUNCTION: Adapter protein that interacts with EDAR DEATH domain and couples the receptor to EDA signaling pathway during morphogenesis of ectodermal organs. Mediates the activation of NF- kappa-B.
SUBUNIT: Self-associates and binds EDAR, TRAF1, TRAF2 and TRAF3.
SUBCELLULAR LOCATION: Cytoplasm (Probable).
TISSUE SPECIFICITY: Detected in adult pancreas, placenta and fetal skin, and at lower levels in lung, thymus, prostate and testis.
DISEASE: Defects in EDARADD are a cause of ectodermal dysplasia anhidrotic (EDA) [MIM:224900]; also known ectodermal dysplasia hypohidrotic autosomal recessive (HED). Ectodermal dysplasia defines a heterogeneous group of disorders due to abnormal development of two or more ectodermal structures. EDA is characterized by sparse hair (atrichosis or hypotrichosis), abnormal or missing teeth and the inability to sweat due to the absence of sweat glands.
SIMILARITY: Contains 1 death domain.
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/EDARADD";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: EDARADD
Diseases sorted by gene-association score: ectodermal dysplasia 11b, hypohidrotic/hair/tooth type, autosomal recessive* (1231), ectodermal dysplasia 11a, hypohidrotic/hair/tooth type, autosomal dominant* (1200), ectodermal dysplasia 10a, hypohidrotic/hair/nail type, autosomal dominant* (530), hypohidrotic ectodermal dysplasia autosomal recessive* (530), ectodermal dysplasia 10b, hypohidrotic/hair/tooth type, autosomal recessive* (306), tooth agenesis* (125), hypohidrotic ectodermal dysplasia, autosomal* (71), ectodermal dysplasia (18), hypohidrosis (14), anodontia (8), ectodermal dysplasia 2, clouston type (6), sweat gland disease (6)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 2.79 RPKM in Stomach
Total median expression: 25.71 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -9.5065-0.146 Picture PostScript Text
3' UTR -703.272059-0.342 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000488 - Death
IPR011029 - DEATH-like

Pfam Domains:
PF00531 - Death domain

SCOP Domains:
47986 - DEATH domain

ModBase Predicted Comparative 3D Structure on Q8WWZ3
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Biological Process:
GO:0007165 signal transduction
GO:0007275 multicellular organism development
GO:0030154 cell differentiation
GO:0033209 tumor necrosis factor-mediated signaling pathway

Cellular Component:
GO:0005737 cytoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  AK290862 - Homo sapiens cDNA FLJ76152 complete cds, highly similar to Homo sapiens EDAR-associated death domain (EDARADD), transcript variant A, mRNA.
AY028913 - Homo sapiens ectodysplasia A receptor associated death domain A (EDARADD) mRNA, complete cds; alternatively spliced.
BC106873 - Homo sapiens cDNA clone IMAGE:40006673, **** WARNING: chimeric clone ****.
BC106874 - Homo sapiens cDNA clone IMAGE:40006674, **** WARNING: chimeric clone ****.
BC114557 - Homo sapiens cDNA clone IMAGE:40006676.
BC114560 - Homo sapiens cDNA clone IMAGE:40006678.
BC128082 - Homo sapiens EDAR-associated death domain, mRNA (cDNA clone MGC:149066 IMAGE:40006675), complete cds.
AK314634 - Homo sapiens cDNA, FLJ95477, Homo sapiens EDAR-associated death domain (EDARADD), transcriptvariant B, mRNA.
AK096339 - Homo sapiens cDNA FLJ39020 fis, clone NT2RP7003261, highly similar to ALPHA ENOLASE (EC 4.2.1.11).
AY028914 - Homo sapiens ectodysplasia A receptor associated death domain B (EDARADD) mRNA, complete cds; alternatively spliced.
AK291930 - Homo sapiens cDNA FLJ78050 complete cds, highly similar to Homo sapiens EDAR-associated death domain (EDARADD), transcript variant B, mRNA.
BC006533 - Homo sapiens EDAR-associated death domain, mRNA (cDNA clone IMAGE:3936282), partial cds.
AY071862 - Homo sapiens crinkled (CR) mRNA, complete cds.
JD126955 - Sequence 107979 from Patent EP1572962.
JD326662 - Sequence 307686 from Patent EP1572962.
JD258101 - Sequence 239125 from Patent EP1572962.
JD310785 - Sequence 291809 from Patent EP1572962.
JD316326 - Sequence 297350 from Patent EP1572962.
JD060890 - Sequence 41914 from Patent EP1572962.
JD153721 - Sequence 134745 from Patent EP1572962.
JD274308 - Sequence 255332 from Patent EP1572962.
JD284234 - Sequence 265258 from Patent EP1572962.
JD046668 - Sequence 27692 from Patent EP1572962.
BC046928 - Homo sapiens enolase 1, (alpha) pseudogene, mRNA (cDNA clone IMAGE:3689936).
JD428206 - Sequence 409230 from Patent EP1572962.
JD548323 - Sequence 529347 from Patent EP1572962.
JD186731 - Sequence 167755 from Patent EP1572962.
JD067700 - Sequence 48724 from Patent EP1572962.
JD451876 - Sequence 432900 from Patent EP1572962.
AB463607 - Synthetic construct DNA, clone: pF1KB7163, Homo sapiens ENO1P gene for enolase 1, (alpha) pseudogene, without stop codon, in Flexi system.
KJ903742 - Synthetic construct Homo sapiens clone ccsbBroadEn_13136 EDARADD gene, encodes complete protein.
JD412369 - Sequence 393393 from Patent EP1572962.
JD270578 - Sequence 251602 from Patent EP1572962.
JD033063 - Sequence 14087 from Patent EP1572962.
JD469218 - Sequence 450242 from Patent EP1572962.
JD335559 - Sequence 316583 from Patent EP1572962.
JD391133 - Sequence 372157 from Patent EP1572962.
JD274460 - Sequence 255484 from Patent EP1572962.
LF206133 - JP 2014500723-A/13636: Polycomb-Associated Non-Coding RNAs.
JD163004 - Sequence 144028 from Patent EP1572962.
LF351744 - JP 2014500723-A/159247: Polycomb-Associated Non-Coding RNAs.
JD142197 - Sequence 123221 from Patent EP1572962.
JD209627 - Sequence 190651 from Patent EP1572962.
JD372607 - Sequence 353631 from Patent EP1572962.
LF351743 - JP 2014500723-A/159246: Polycomb-Associated Non-Coding RNAs.
JD085641 - Sequence 66665 from Patent EP1572962.
JD476393 - Sequence 457417 from Patent EP1572962.
LF351742 - JP 2014500723-A/159245: Polycomb-Associated Non-Coding RNAs.
JD295095 - Sequence 276119 from Patent EP1572962.
JD485196 - Sequence 466220 from Patent EP1572962.
JD096123 - Sequence 77147 from Patent EP1572962.
LF351741 - JP 2014500723-A/159244: Polycomb-Associated Non-Coding RNAs.
JD560510 - Sequence 541534 from Patent EP1572962.
JD193025 - Sequence 174049 from Patent EP1572962.
JD140842 - Sequence 121866 from Patent EP1572962.
JD508572 - Sequence 489596 from Patent EP1572962.
JD435767 - Sequence 416791 from Patent EP1572962.
JD042024 - Sequence 23048 from Patent EP1572962.
JD326666 - Sequence 307690 from Patent EP1572962.
JD164471 - Sequence 145495 from Patent EP1572962.
JD138417 - Sequence 119441 from Patent EP1572962.
JD176454 - Sequence 157478 from Patent EP1572962.
JD066652 - Sequence 47676 from Patent EP1572962.
JD183943 - Sequence 164967 from Patent EP1572962.
JD092305 - Sequence 73329 from Patent EP1572962.
JD558937 - Sequence 539961 from Patent EP1572962.
JD537867 - Sequence 518891 from Patent EP1572962.
JD050911 - Sequence 31935 from Patent EP1572962.
MA587321 - JP 2018138019-A/159247: Polycomb-Associated Non-Coding RNAs.
MA587320 - JP 2018138019-A/159246: Polycomb-Associated Non-Coding RNAs.
MA587319 - JP 2018138019-A/159245: Polycomb-Associated Non-Coding RNAs.
MA587318 - JP 2018138019-A/159244: Polycomb-Associated Non-Coding RNAs.
MA441710 - JP 2018138019-A/13636: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q8WWZ3 (Reactome details) participates in the following event(s):

R-HSA-5675656 EDA:EDAR binds EDARADD
R-HSA-5669034 TNFs bind their physiological receptors
R-HSA-5668541 TNFR2 non-canonical NF-kB pathway
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: A2VCK5, A8K7B5, B1AL54, B9ZVW5, EDAD_HUMAN, NM_145861, NP_665860, Q5VYJ7, Q8WWZ3
UCSC ID: uc001hxu.1
RefSeq Accession: NM_145861
Protein: Q8WWZ3 (aka EDAD_HUMAN)
CCDS: CCDS1610.1

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene EDARADD:
x-hed (Hypohidrotic Ectodermal Dysplasia)

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_145861.2
exon count: 6CDS single in 3' UTR: no RNA size: 2772
ORF size: 648CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 1453.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.