Human Gene EMID1 (uc003aem.4)
Description: Homo sapiens EMI domain containing 1 (EMID1), transcript variant 1, mRNA.
Transcript (Including UTRs)
Position: hg19 chr22:29,601,901-29,655,586 Size: 53,686 Total Exon Count: 15 Strand: +
Coding Region
Position: hg19 chr22:29,602,028-29,654,933 Size: 52,906 Coding Exon Count: 15
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Primer design for this transcript
Genetic Association Studies of Complex Diseases and Disorders
Genetic Association Database (archive): EMID1
CDC HuGE Published Literature: EMID1
Positive Disease Associations: Arteries
Related Studies: Arteries , , .
[PubMed 0 ]
Comparative Toxicogenomics Database (CTD)
The following chemicals interact with this gene
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
Pfam Domains: PF01391 - Collagen triple helix repeat (20 copies)
PF07546 - EMI domain
ModBase Predicted Comparative 3D Structure on Q96A84-3
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse Rat Zebrafish D. melanogaster C. elegans S. cerevisiae
No ortholog No ortholog No ortholog No ortholog No ortholog No ortholog
Gene Details
Gene Sorter
Descriptions from all associated GenBank mRNAs
BC046358 - Homo sapiens EMI domain containing 1, mRNA (cDNA clone MGC:50657 IMAGE:5770546), complete cds.CR456407 - Homo sapiens bK984G1.1 full length open reading frame (ORF) cDNA clone (cDNA clone C22ORF:pGEM.bK984G1.1).CU013253 - Homo sapiens EMID1, mRNA (cDNA clone IMAGE:100000031), complete cds, without stop codon, in Gateway system.CU012965 - Homo sapiens EMID1, mRNA (cDNA clone IMAGE:100000127), complete cds, with stop codon, in Gateway system.KJ900126 - Synthetic construct Homo sapiens clone ccsbBroadEn_09520 EMID1 gene, encodes complete protein.AB463024 - Synthetic construct DNA, clone: pF1KB8714, Homo sapiens EMID1 gene for EMI domain containing 1, without stop codon, in Flexi system.AJ416090 - Homo sapiens mRNA for putative emu1 protein.AL831910 - Homo sapiens mRNA; cDNA DKFZp547H099 (from clone DKFZp547H099).BC013830 - Homo sapiens EMI domain containing 1, mRNA (cDNA clone IMAGE:4149063).AK097163 - Homo sapiens cDNA FLJ39844 fis, clone SPLEN2014381.JD544634 - Sequence 525658 from Patent EP1572962.JD210489 - Sequence 191513 from Patent EP1572962.JD319882 - Sequence 300906 from Patent EP1572962.JD400474 - Sequence 381498 from Patent EP1572962.JD260405 - Sequence 241429 from Patent EP1572962.JD175239 - Sequence 156263 from Patent EP1572962.JD476603 - Sequence 457627 from Patent EP1572962.JD459958 - Sequence 440982 from Patent EP1572962.JD177306 - Sequence 158330 from Patent EP1572962.JD107085 - Sequence 88109 from Patent EP1572962.JD479055 - Sequence 460079 from Patent EP1572962.JD483448 - Sequence 464472 from Patent EP1572962.JD389702 - Sequence 370726 from Patent EP1572962.JD151280 - Sequence 132304 from Patent EP1572962.JD201219 - Sequence 182243 from Patent EP1572962.JD190975 - Sequence 171999 from Patent EP1572962.JD374662 - Sequence 355686 from Patent EP1572962.JD458615 - Sequence 439639 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: EMU1, NM_133455, NP_597712, Q96A84-3, uc003aem.3UCSC ID: uc003aem.4RefSeq Accession: NM_133455
Protein: Q96A84-3 , splice isoform of Q96A84
CCDS: CCDS33630.1
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NM_133455.3
exon count:
15 CDS single in 3' UTR:
no
RNA size:
2133
ORF size:
1332 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
2591.00 frame shift in genome:
no
% Coverage:
99.02
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.