Human Gene FOXO4 (uc004dys.2)
  Description: Homo sapiens forkhead box O4 (FOXO4), transcript variant 1, mRNA.
RefSeq Summary (NM_005938): This gene encodes a member of the O class of winged helix/forkhead transcription factor family. Proteins encoded by this class are regulated by factors involved in growth and differentiation indicating they play a role in these processes. A translocation involving this gene on chromosome X and the homolog of the Drosophila trithorax gene, encoding a DNA binding protein, located on chromosome 11 is associated with leukemia. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jan 2010].
Transcript (Including UTRs)
   Position: hg19 chrX:70,315,999-70,323,384 Size: 7,386 Total Exon Count: 3 Strand: +
Coding Region
   Position: hg19 chrX:70,316,379-70,321,934 Size: 5,556 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsMalaCards
CTDGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther NamesModel Information
Methods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:70,315,999-70,323,384)mRNA (may differ from genome)Protein (505 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkHGNCHPRDLynxMalacardsMGI
neXtProtOMIMPubMedReactomeTreefamUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: FOXO4_HUMAN
DESCRIPTION: RecName: Full=Forkhead box protein O4; AltName: Full=Fork head domain transcription factor AFX1;
FUNCTION: Transcription factor involved in the regulation of the insulin signaling pathway. Binds to insulin-response elements (IREs) and can activate transcription of IGFBP1. Down-regulates expression of HIF1A and suppresses hypoxia-induced transcriptional activation of HIF1A-modulated genes. Also involved in negative regulation of the cell cycle. Involved in increased proteasome activity in embryonic stem cells (ESCs) by activating expression of PSMD11 in ESCs, leading to enhanced assembly of the 26S proteasome, followed by higher proteasome activity.
SUBUNIT: Interacts with CREBBP/CBP, CTNNB1, MYOCD, SIRT1, SRF and YWHAZ. Acetylated by CREBBP/CBP and deacetylated by SIRT1. Binding of YWHAZ inhibits DNA-binding. Interacts with USP7; the interaction is enhanced in presence of hydrogen peroxide and occurs independently of TP53. Interacts with NLK, and this inhibits monoubiquitination and transcriptional activity.
INTERACTION: Q96EB6:SIRT1; NbExp=3; IntAct=EBI-4481939, EBI-1802965;
SUBCELLULAR LOCATION: Cytoplasm. Nucleus. Note=When phosphorylated, translocated from nucleus to cytoplasm. Dephosphorylation triggers nuclear translocation. Monoubiquitination increases nuclear localization. When deubiquitinated, translocated from nucleus to cytoplasm.
TISSUE SPECIFICITY: Heart, brain, placenta, lung, liver, skeletal muscle, kidney and pancreas. Isoform zeta is most abundant in the liver, kidney, and pancreas.
PTM: Acetylation by CREBBP/CBP, which is induced by peroxidase stress, inhibits transcriptional activity. Deacetylation by SIRT1 is NAD-dependent and stimulates transcriptional activity.
PTM: Phosphorylation by PKB/AKT1 inhibits transcriptional activity and is responsible for cytoplasmic localization. May be phosphorylated at multiple sites by NLK.
PTM: Monoubiquitinated; monoubiquitination is induced by oxidative stress and reduced by deacetylase inhibitors; results in its relocalization to the nucleus and its increased transcriptional activity. Deubiquitinated by USP7; deubiquitination is induced by oxidative stress; enhances its interaction with USP7 and consequently, deubiquitination; increases its translocation to the cytoplasm and inhibits its transcriptional activity. Hydrogene- peroxide-induced ubiquitination and USP7-mediated deubiquitination have no major effect on its protein stability.
DISEASE: Note=A chromosomal aberration involving FOXO4 is found in acute leukemias. Translocation t(X;11)(q13;q23) with MLL/HRX. The result is a rogue activator protein.
PHARMACEUTICAL: A constitutively active FOXO4 mutant where phosphorylation sites Thr-32, Ser-197 and Ser-262 have been mutated to alanine may have therapeutic potential in ERBB2/HER2- overexpressing cancers as it inhibits ERBB2-mediated cell survival, transformation and tumorigenicity.
SIMILARITY: Contains 1 fork-head DNA-binding domain.
WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and Haematology; URL="http://atlasgeneticsoncology.org/Genes/AFX1ID57.html";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): FOXO4
CDC HuGE Published Literature: FOXO4

-  MalaCards Disease Associations
  MalaCards Gene Search: FOXO4
Diseases sorted by gene-association score: balloon cell malignant melanoma (3), sarcomatoid squamous cell skin carcinoma (2), myeloid/lymphoid or mixed lineage leukemia (2), malignant fibroxanthoma (2), skin sarcoma (2), branch retinal artery occlusion (1), connective tissue cancer (1), long qt syndrome 1 (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 32.72 RPKM in Brain - Substantia nigra
Total median expression: 705.29 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -148.94380-0.392 Picture PostScript Text
3' UTR -578.861450-0.399 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001766 - TF_fork_head
IPR018122 - TF_fork_head_CS
IPR011991 - WHTH_trsnscrt_rep_DNA-bd

Pfam Domains:
PF00250 - Forkhead domain
PF16676 - Transactivation domain of FOXO protein family

SCOP Domains:
46785 - "Winged helix" DNA-binding domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1E17 - NMR MuPIT 3L2C - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P98177
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologGenome BrowserNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
  Ensembl   
  Protein Sequence   
  Alignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003677 DNA binding
GO:0003700 transcription factor activity, sequence-specific DNA binding
GO:0005515 protein binding
GO:0008013 beta-catenin binding
GO:0008134 transcription factor binding
GO:0019899 enzyme binding
GO:0042802 identical protein binding
GO:0043565 sequence-specific DNA binding
GO:1990841 promoter-specific chromatin binding

Biological Process:
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006366 transcription from RNA polymerase II promoter
GO:0007049 cell cycle
GO:0007050 cell cycle arrest
GO:0007095 mitotic G2 DNA damage checkpoint
GO:0007275 multicellular organism development
GO:0007517 muscle organ development
GO:0007568 aging
GO:0008285 negative regulation of cell proliferation
GO:0008286 insulin receptor signaling pathway
GO:0014911 positive regulation of smooth muscle cell migration
GO:0016525 negative regulation of angiogenesis
GO:0016579 protein deubiquitination
GO:0030154 cell differentiation
GO:0031667 response to nutrient levels
GO:0045893 positive regulation of transcription, DNA-templated
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0048863 stem cell differentiation
GO:0051151 negative regulation of smooth muscle cell differentiation
GO:0070317 negative regulation of G0 to G1 transition
GO:0071158 positive regulation of cell cycle arrest
GO:1990785 response to water-immersion restraint stress

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0016607 nuclear speck


-  Descriptions from all associated GenBank mRNAs
  AK300142 - Homo sapiens cDNA FLJ56550 complete cds, highly similar to Fork head domain transcription factor AFX1.
X93996 - H.sapiens mRNA for AFX protein.
JD214726 - Sequence 195750 from Patent EP1572962.
JD474972 - Sequence 455996 from Patent EP1572962.
BC106761 - Homo sapiens forkhead box O4, mRNA (cDNA clone MGC:120490 IMAGE:40025381), complete cds.
JD398931 - Sequence 379955 from Patent EP1572962.
JD059098 - Sequence 40122 from Patent EP1572962.
AB463650 - Synthetic construct DNA, clone: pF1KB7772, Homo sapiens FOXO4 gene for forkhead box O4, without stop codon, in Flexi system.
AF384029 - Homo sapiens forkhead transcription factor AFX variant zeta mRNA, complete cds, alternatively spliced.
BC026735 - Homo sapiens forkhead box O4, mRNA (cDNA clone IMAGE:5106176).
JD507458 - Sequence 488482 from Patent EP1572962.
JD337340 - Sequence 318364 from Patent EP1572962.
JD242271 - Sequence 223295 from Patent EP1572962.
JD527237 - Sequence 508261 from Patent EP1572962.
JD120021 - Sequence 101045 from Patent EP1572962.
JD455450 - Sequence 436474 from Patent EP1572962.
JD277560 - Sequence 258584 from Patent EP1572962.
JD298235 - Sequence 279259 from Patent EP1572962.
JD286453 - Sequence 267477 from Patent EP1572962.
JD119623 - Sequence 100647 from Patent EP1572962.
JD304684 - Sequence 285708 from Patent EP1572962.
JD042137 - Sequence 23161 from Patent EP1572962.
JD537195 - Sequence 518219 from Patent EP1572962.
JD091723 - Sequence 72747 from Patent EP1572962.
JD170395 - Sequence 151419 from Patent EP1572962.
JD384020 - Sequence 365044 from Patent EP1572962.
JD204156 - Sequence 185180 from Patent EP1572962.
JD425131 - Sequence 406155 from Patent EP1572962.
JD481743 - Sequence 462767 from Patent EP1572962.
JD137032 - Sequence 118056 from Patent EP1572962.
JD233444 - Sequence 214468 from Patent EP1572962.
JD278786 - Sequence 259810 from Patent EP1572962.
JD496811 - Sequence 477835 from Patent EP1572962.
JD209682 - Sequence 190706 from Patent EP1572962.
JD402669 - Sequence 383693 from Patent EP1572962.
JD510236 - Sequence 491260 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_aktPathway - AKT Signaling Pathway
h_rasPathway - Ras Signaling Pathway

Reactome (by CSHL, EBI, and GO)

Protein P98177 (Reactome details) participates in the following event(s):

R-HSA-199299 AKT can phosphorylate forkhead box transcription factors
R-HSA-2399992 AKT1 E17K mutant phosphorylates forkhead box transcription factors
R-HSA-198693 AKT phosphorylates targets in the nucleus
R-HSA-5674400 Constitutive Signaling by AKT1 E17K in Cancer
R-HSA-1257604 PIP3 activates AKT signaling
R-HSA-2219528 PI3K/AKT Signaling in Cancer
R-HSA-9006925 Intracellular signaling by second messengers
R-HSA-5663202 Diseases of signal transduction
R-HSA-162582 Signal Transduction
R-HSA-1643685 Disease
R-HSA-199299 AKT can phosphorylate forkhead box transcription factors
R-HSA-2399992 AKT1 E17K mutant phosphorylates forkhead box transcription factors
R-HSA-198693 AKT phosphorylates targets in the nucleus
R-HSA-5674400 Constitutive Signaling by AKT1 E17K in Cancer
R-HSA-1257604 PIP3 activates AKT signaling
R-HSA-2219528 PI3K/AKT Signaling in Cancer
R-HSA-9006925 Intracellular signaling by second messengers
R-HSA-5663202 Diseases of signal transduction
R-HSA-162582 Signal Transduction
R-HSA-1643685 Disease
R-HSA-5689950 USP7 deubiquitinates TP53,MDM2,MDM4,FOXO4, PTEN
R-HSA-5689880 Ub-specific processing proteases
R-HSA-5688426 Deubiquitination
R-HSA-597592 Post-translational protein modification
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: AFX, AFX1, B7WPJ7, FOXO4_HUMAN, MLLT7, NM_005938, NP_005929, O43821, P98177, Q13720, Q3KPF1, Q8TDK9
UCSC ID: uc004dys.2
RefSeq Accession: NM_005938
Protein: P98177 (aka FOXO4_HUMAN or FXO4_HUMAN)
CCDS: CCDS43969.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_005938.3
exon count: 3CDS single in 3' UTR: no RNA size: 3365
ORF size: 1518CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 2140.00frame shift in genome: no % Coverage: 99.49
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: yes # AT/AC introns 0
selenocysteine: no end bleed into intron: 716# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.