Mouse Gene Slc25a17 (ENSMUST00000023040.9) from GENCODE VM33
  Description: Mus musculus solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17 (Slc25a17), mRNA. (from RefSeq NM_011399)
Gencode Transcript: ENSMUST00000023040.9
Gencode Gene: ENSMUSG00000022404.9
Transcript (Including UTRs)
   Position: mm39 chr15:81,203,112-81,245,013 Size: 41,902 Total Exon Count: 9 Strand: -
Coding Region
   Position: mm39 chr15:81,203,830-81,244,931 Size: 41,102 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther Names
Methods
Data last updated at UCSC: 2023-08-15 19:06:27

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr15:81,203,112-81,245,013)mRNA (may differ from genome)Protein (307 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedReactomeSOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: PM34_MOUSE
DESCRIPTION: RecName: Full=Peroxisomal membrane protein PMP34; AltName: Full=34 kDa peroxisomal membrane protein; AltName: Full=Solute carrier family 25 member 17;
FUNCTION: Peroxisomal transporter for multiple cofactors like coenzyme A (CoA), flavin adenine dinucleotide (FAD), flavin mononucleotide (FMN) and nucleotide adenosine monophosphate (AMP), and to a lesser extend for nicotinamide adenine dinucleotide (NAD(+)), adenosine diphosphate (ADP) and adenosine 3',5'- diphosphate (PAP). May catalyze the transport of free CoA, FAD and NAD(+) from the cytosol into the peroxisomal matrix by a counter- exchange mechanism. Inhibited by pyridoxal 5'-phosphate and bathophenanthroline in vitro (By similarity).
SUBUNIT: Interacts (via N- and C-terminus peroxisomal targeting regions) with PEX19; the interaction occurs with the newly synthesized SLC25A17 in the cytosol (By similarity).
SUBCELLULAR LOCATION: Cytoplasm (By similarity). Peroxisome membrane; Multi-pass membrane protein.
TISSUE SPECIFICITY: Expressed in liver.
DOMAIN: The N- and C-terminal portions are exposed to the cytoplasm. A region between helical transmembrane domains (TM) 4 and 5 and TM1-TM3 or TM4-TM6 are necessary for the peroxisome- targeting activity (By similarity). Lacks a typical peroxisomal sorting signal.
SIMILARITY: Belongs to the mitochondrial carrier family.
SIMILARITY: Contains 3 Solcar repeats.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -22.6082-0.276 Picture PostScript Text
3' UTR -181.60718-0.253 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002067 - Mit_carrier
IPR018108 - Mitochondrial_sb/sol_carrier
IPR023395 - Mt_carrier_dom

Pfam Domains:
PF00153 - Mitochondrial carrier protein

ModBase Predicted Comparative 3D Structure on O70579
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserGenome BrowserGenome BrowserNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBankRGDEnsemblEnsembl  
Protein SequenceProtein SequenceProtein SequenceProtein Sequence  
AlignmentAlignmentAlignmentAlignment  

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005347 ATP transmembrane transporter activity
GO:0015217 ADP transmembrane transporter activity
GO:0015228 coenzyme A transmembrane transporter activity
GO:0015230 FAD transmembrane transporter activity
GO:0044610 FMN transmembrane transporter activity
GO:0051087 chaperone binding
GO:0051724 NAD transporter activity
GO:0080122 AMP transmembrane transporter activity

Biological Process:
GO:0006635 fatty acid beta-oxidation
GO:0006839 mitochondrial transport
GO:0015858 nucleoside transport
GO:0015866 ADP transport
GO:0015867 ATP transport
GO:0015908 fatty acid transport
GO:0035349 coenzyme A transmembrane transport
GO:0035350 FAD transmembrane transport
GO:0035352 NAD transmembrane transport
GO:0043132 NAD transport
GO:0055085 transmembrane transport
GO:0080121 AMP transport

Cellular Component:
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0005777 peroxisome
GO:0005778 peroxisomal membrane
GO:0005779 integral component of peroxisomal membrane
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  BC008571 - Mus musculus solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17, mRNA (cDNA clone MGC:6724 IMAGE:3587806), complete cds.
AJ006341 - Mus musculus mRNA for peroxisomal integral membrane protein PMP34.
AK003672 - Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1110014A12 product:solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34 kDa), member 17, full insert sequence.
AK002388 - Mus musculus adult male kidney cDNA, RIKEN full-length enriched library, clone:0610009F07 product:solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34 kDa), member 17, full insert sequence.
BC011292 - Mus musculus solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17, mRNA (cDNA clone MGC:18353 IMAGE:3962111), complete cds.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein O70579 (Reactome details) participates in the following event(s):

R-MMU-389652 PMP34-mediated exchange of cytosolic ATP for peroxisomal AMP
R-MMU-389599 Alpha-oxidation of phytanate
R-MMU-390918 Peroxisomal lipid metabolism
R-MMU-8978868 Fatty acid metabolism
R-MMU-556833 Metabolism of lipids
R-MMU-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: ENSMUST00000023040.1, ENSMUST00000023040.2, ENSMUST00000023040.3, ENSMUST00000023040.4, ENSMUST00000023040.5, ENSMUST00000023040.6, ENSMUST00000023040.7, ENSMUST00000023040.8, NM_011399, O70579, PM34_MOUSE, Pmp34, Pmp35, uc007wwk.1, uc007wwk.2, uc007wwk.3
UCSC ID: ENSMUST00000023040.9
RefSeq Accession: NM_011399
Protein: O70579 (aka PM34_MOUSE)

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.