Mouse Gene Slc25a40 (ENSMUST00000066921.10) from GENCODE VM33
Description: Mus musculus solute carrier family 25, member 40 (Slc25a40), transcript variant 1, mRNA. (from RefSeq NM_178766)
Gencode Transcript: ENSMUST00000066921.10
Gencode Gene: ENSMUSG00000054099.12
Transcript (Including UTRs)
Position: mm39 chr5:8,472,850-8,504,797 Size: 31,948 Total Exon Count: 12 Strand: +
Coding Region
Position: mm39 chr5:8,477,417-8,503,298 Size: 25,882 Coding Exon Count: 10
Data last updated at UCSC: 2023-08-15 19:06:27
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: S2540_MOUSE
DESCRIPTION: RecName: Full=Solute carrier family 25 member 40;
SUBCELLULAR LOCATION: Mitochondrion inner membrane; Multi-pass membrane protein (By similarity).SIMILARITY: Belongs to the mitochondrial carrier family.SIMILARITY: Contains 3 Solcar repeats.
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
The following chemicals interact with this gene
mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR002067 - Mit_carrier
IPR018108 - Mitochondrial_sb/sol_carrier
IPR023395 - Mt_carrier_dom
Pfam Domains: PF00153 - Mitochondrial carrier protein
ModBase Predicted Comparative 3D Structure on Q8BGP6
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
AK044260 - Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930004C23 product:similar to Mitochondrial carrier family protein [Homo sapiens], full insert sequence.AK045863 - Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230315F11 product:similar to MITOCHONDRIAL CARRIER FAMILY PROTEIN [Homo sapiens], full insert sequence.AK044862 - Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length enriched library, clone:B130008N03 product:unclassifiable, full insert sequence.AK136770 - Mus musculus adult male diencephalon cDNA, RIKEN full-length enriched library, clone:9330005I01 product:similar to Mitochondrial carrier family protein [Homo sapiens], full insert sequence.AK163037 - Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched library, clone:A430089L20 product:similar to Mitochondrial carrier family protein [Homo sapiens], full insert sequence.AK088444 - Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430016M04 product:similar to MITOCHONDRIAL CARRIER FAMILY PROTEIN [Homo sapiens], full insert sequence.AK079538 - Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230040D12 product:similar to MITOCHONDRIAL CARRIER FAMILY PROTEIN [Homo sapiens], full insert sequence.AK084797 - Mus musculus 13 days embryo heart cDNA, RIKEN full-length enriched library, clone:D330044F17 product:similar to MITOCHONDRIAL CARRIER FAMILY PROTEIN [Homo sapiens], full insert sequence.BC083103 - Mus musculus solute carrier family 25, member 40, mRNA (cDNA clone MGC:103255 IMAGE:30726859), complete cds.AK050815 - Mus musculus 9 days embryo whole body cDNA, RIKEN full-length enriched library, clone:D030021M05 product:unclassifiable, full insert sequence.
Other Names for This Gene
Alternate Gene Symbols: ENSMUST00000066921.1, ENSMUST00000066921.2, ENSMUST00000066921.3, ENSMUST00000066921.4, ENSMUST00000066921.5, ENSMUST00000066921.6, ENSMUST00000066921.7, ENSMUST00000066921.8, ENSMUST00000066921.9, NM_178766, Q3UVZ5, Q8BGP6, Q8BXT8, S2540_MOUSE, uc008wkf.1, uc008wkf.2, uc008wkf.3, uc008wkf.4, uc008wkf.5UCSC ID: ENSMUST00000066921.10RefSeq Accession: NM_178766
Protein: Q8BGP6
(aka S2540_MOUSE)
Methods, Credits, and Use Restrictions
Click here
for details on how this gene model was made and data restrictions if any.