Mouse Gene Slc25a36 (ENSMUST00000085206.10) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus solute carrier family 25, member 36 (Slc25a36), mRNA. (from RefSeq NM_138756)
Gencode Transcript: ENSMUST00000085206.10
Gencode Gene: ENSMUSG00000032449.13
Transcript (Including UTRs)
   Position: mm10 chr9:97,074,961-97,111,157 Size: 36,197 Total Exon Count: 7 Strand: -
Coding Region
   Position: mm10 chr9:97,079,046-97,110,951 Size: 31,906 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther NamesModel Information
Methods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr9:97,074,961-97,111,157)mRNA (may differ from genome)Protein (311 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedSOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: S2536_MOUSE
DESCRIPTION: RecName: Full=Solute carrier family 25 member 36;
SUBCELLULAR LOCATION: Mitochondrion inner membrane; Multi-pass membrane protein (By similarity).
SIMILARITY: Belongs to the mitochondrial carrier family.
SIMILARITY: Contains 3 Solcar repeats.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -86.60206-0.420 Picture PostScript Text
3' UTR -1077.404085-0.264 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002067 - Mit_carrier
IPR018108 - Mitochondrial_sb/sol_carrier
IPR023395 - Mt_carrier_dom

Pfam Domains:
PF00153 - Mitochondrial carrier protein

SCOP Domains:
103506 - Mitochondrial carrier

ModBase Predicted Comparative 3D Structure on Q922G0
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologGenome BrowserGenome BrowserNo ortholog
Gene Details    Gene Details
Gene Sorter    Gene Sorter
 RGDEnsemblEnsemblWormBaseSGD
 Protein Sequence Protein SequenceProtein Sequence 
 Alignment AlignmentAlignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0015218 pyrimidine nucleotide transmembrane transporter activity

Biological Process:
GO:0000002 mitochondrial genome maintenance
GO:0006839 mitochondrial transport
GO:0006864 pyrimidine nucleotide transport
GO:0007005 mitochondrion organization
GO:0051881 regulation of mitochondrial membrane potential
GO:0055085 transmembrane transport
GO:1990519 mitochondrial pyrimidine nucleotide import

Cellular Component:
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  LF197756 - JP 2014500723-A/5259: Polycomb-Associated Non-Coding RNAs.
AK087750 - Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN full-length enriched library, clone:E330015J08 product:inferred: Mus musculus, Similar to hypothetical protein FLJ10618, clone IMAGE:3594297, mRNA, partial cds, full insert sequence.
AK037383 - Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130013B19 product:hypothetical protein, full insert sequence.
LF309044 - JP 2014500723-A/116547: Polycomb-Associated Non-Coding RNAs.
LF309045 - JP 2014500723-A/116548: Polycomb-Associated Non-Coding RNAs.
AK082754 - Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:C330005L02 product:unclassifiable, full insert sequence.
AK046989 - Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930009J23 product:inferred: Mus musculus, Similar to hypothetical protein FLJ10618, clone IMAGE:3594297, mRNA, partial cds, full insert sequence.
AK034423 - Mus musculus adult male diencephalon cDNA, RIKEN full-length enriched library, clone:9330189G22 product:hypothetical Mitochondrial energy transfer proteins (carrier protein) containing protein, full insert sequence.
AK035037 - Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430077E01 product:inferred: Mus musculus, Similar to hypothetical protein FLJ10618, clone IMAGE:3594297, mRNA, partial cds, full insert sequence.
LF309048 - JP 2014500723-A/116551: Polycomb-Associated Non-Coding RNAs.
LF309049 - JP 2014500723-A/116552: Polycomb-Associated Non-Coding RNAs.
LF309050 - JP 2014500723-A/116553: Polycomb-Associated Non-Coding RNAs.
LF309051 - JP 2014500723-A/116554: Polycomb-Associated Non-Coding RNAs.
AK078779 - Mus musculus 15 days embryo male testis cDNA, RIKEN full-length enriched library, clone:8030476B22 product:SIMILAR TO HYPOTHETICAL PROTEIN FLJ10618 homolog [Mus musculus], full insert sequence.
LF309052 - JP 2014500723-A/116555: Polycomb-Associated Non-Coding RNAs.
LF309053 - JP 2014500723-A/116556: Polycomb-Associated Non-Coding RNAs.
AK053646 - Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130118D21 product:CDNA FLJ10618 FIS, CLONE NT2RP2005465, WEAKLY SIMILAR TO MITOCHONDRIAL CARRIER PROTEIN RIM2 homolog [Homo sapiens], full insert sequence.
BC004098 - Mus musculus solute carrier family 25, member 36, mRNA (cDNA clone IMAGE:3594297), partial cds.
BC008171 - Mus musculus solute carrier family 25, member 36, mRNA (cDNA clone MGC:12130 IMAGE:3710468), complete cds.
LF309054 - JP 2014500723-A/116557: Polycomb-Associated Non-Coding RNAs.
AK042075 - Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630056D06 product:Similar to hypothetical protein FLJ10618 (Hypothetical mitochondrial energy transfer proteins), full insert sequence.
LF309055 - JP 2014500723-A/116558: Polycomb-Associated Non-Coding RNAs.
LF309056 - JP 2014500723-A/116559: Polycomb-Associated Non-Coding RNAs.
LF309057 - JP 2014500723-A/116560: Polycomb-Associated Non-Coding RNAs.
LF289084 - JP 2014500723-A/96587: Polycomb-Associated Non-Coding RNAs.
AK160773 - Mus musculus 13 days embryo head cDNA, RIKEN full-length enriched library, clone:3110088H01 product:Similar to hypothetical protein FLJ10618 (Hypothetical mitochondrial energy transfer proteins) homolog [Mus musculus], full insert sequence.
MA433333 - JP 2018138019-A/5259: Polycomb-Associated Non-Coding RNAs.
MA544621 - JP 2018138019-A/116547: Polycomb-Associated Non-Coding RNAs.
MA544622 - JP 2018138019-A/116548: Polycomb-Associated Non-Coding RNAs.
MA544625 - JP 2018138019-A/116551: Polycomb-Associated Non-Coding RNAs.
MA544626 - JP 2018138019-A/116552: Polycomb-Associated Non-Coding RNAs.
MA544627 - JP 2018138019-A/116553: Polycomb-Associated Non-Coding RNAs.
MA544628 - JP 2018138019-A/116554: Polycomb-Associated Non-Coding RNAs.
MA544629 - JP 2018138019-A/116555: Polycomb-Associated Non-Coding RNAs.
MA544630 - JP 2018138019-A/116556: Polycomb-Associated Non-Coding RNAs.
MA544631 - JP 2018138019-A/116557: Polycomb-Associated Non-Coding RNAs.
MA544632 - JP 2018138019-A/116558: Polycomb-Associated Non-Coding RNAs.
MA544633 - JP 2018138019-A/116559: Polycomb-Associated Non-Coding RNAs.
MA544634 - JP 2018138019-A/116560: Polycomb-Associated Non-Coding RNAs.
MA524661 - JP 2018138019-A/96587: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: NM_138756, Q922G0, S2536_MOUSE, uc009rdb.1, uc009rdb.2
UCSC ID: uc009rdb.2
RefSeq Accession: NM_138756
Protein: Q922G0 (aka S2536_MOUSE)
CCDS: CCDS23420.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.