Mouse Gene Slc25a1 (ENSMUST00000003622.15) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
Description: Mus musculus solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1 (Slc25a1), mRNA. (from RefSeq NM_153150)
Gencode Transcript: ENSMUST00000003622.15
Gencode Gene: ENSMUSG00000003528.15
Transcript (Including UTRs)
Position: mm10 chr16:17,925,223-17,928,219 Size: 2,997 Total Exon Count: 9 Strand: -
Coding Region
Position: mm10 chr16:17,925,813-17,928,079 Size: 2,267 Coding Exon Count: 9
Data last updated at UCSC: 2019-09-19
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: Q8JZU2_MOUSE
DESCRIPTION: SubName: Full=Protein Slc25a1; SubName: Full=Solute carrier family 25 (Mitochondrial carrier, citrate transporter), member 1;
SIMILARITY: Belongs to the mitochondrial carrier family.
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR002067 - Mit_carrier
IPR018108 - Mitochondrial_sb/sol_carrier
IPR023395 - Mt_carrier_dom
Pfam Domains: PF00153 - Mitochondrial carrier protein
SCOP Domains: 103506 - Mitochondrial carrier
ModBase Predicted Comparative 3D Structure on Q8JZU2
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
LF200633 - JP 2014500723-A/8136: Polycomb-Associated Non-Coding RNAs.BC037087 - Mus musculus solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1, mRNA (cDNA clone MGC:47055 IMAGE:5124403), complete cds.AK005070 - Mus musculus adult male liver cDNA, RIKEN full-length enriched library, clone:1300019P08 product:TRICARBOXYLATE TRANSPORT PROTEIN, MITOCHONDRIAL PRECURSOR (CITRATE TRANSPORT PROTEIN) (CTP) (TRICARBOXYLATE CARRIER PROTEIN) homolog [Rattus norvegicus], full insert sequence.AK170191 - Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630026H16 product:solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1, full insert sequence.AK178581 - Mus musculus cDNA, clone:Y0G0107E02, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000003622, based on BLAT search.AK159289 - Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420014L14 product:solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1, full insert sequence.LF247299 - JP 2014500723-A/54802: Polycomb-Associated Non-Coding RNAs.LF247300 - JP 2014500723-A/54803: Polycomb-Associated Non-Coding RNAs.AK188281 - Mus musculus cDNA, clone:Y0G0144K15, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000003622, based on BLAT search.AK206906 - Mus musculus cDNA, clone:Y2G0106F05, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000003622, based on BLAT search.AK211700 - Mus musculus cDNA, clone:Y2G0122J08, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000003622, based on BLAT search.AK219123 - Mus musculus cDNA, clone:Y2G0147H02, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000003622, based on BLAT search.LF247301 - JP 2014500723-A/54804: Polycomb-Associated Non-Coding RNAs.LF247302 - JP 2014500723-A/54805: Polycomb-Associated Non-Coding RNAs.AK177500 - Mus musculus cDNA, clone:Y0G0102P05, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000003622, based on BLAT search.AK185953 - Mus musculus cDNA, clone:Y0G0135M11, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000003622, based on BLAT search.LF247303 - JP 2014500723-A/54806: Polycomb-Associated Non-Coding RNAs.LF247304 - JP 2014500723-A/54807: Polycomb-Associated Non-Coding RNAs.MA436210 - JP 2018138019-A/8136: Polycomb-Associated Non-Coding RNAs.MA482876 - JP 2018138019-A/54802: Polycomb-Associated Non-Coding RNAs.MA482877 - JP 2018138019-A/54803: Polycomb-Associated Non-Coding RNAs.MA482878 - JP 2018138019-A/54804: Polycomb-Associated Non-Coding RNAs.MA482879 - JP 2018138019-A/54805: Polycomb-Associated Non-Coding RNAs.MA482880 - JP 2018138019-A/54806: Polycomb-Associated Non-Coding RNAs.MA482881 - JP 2018138019-A/54807: Polycomb-Associated Non-Coding RNAs.
Biochemical and Signaling Pathways
Other Names for This Gene
Alternate Gene Symbols: mCG_131850, NM_153150, Q8JZU2, Q8JZU2_MOUSE, uc007ymp.1, uc007ymp.2, uc007ymp.3UCSC ID: uc007ymp.3RefSeq Accession: NM_153150
Protein: Q8JZU2
CCDS: CCDS28014.1
Gene Model Information
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.