Mouse Gene Slc25a44 (ENSMUST00000195657.5) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus solute carrier family 25, member 44 (Slc25a44), transcript variant 2, mRNA. (from RefSeq NM_001145876)
Gencode Transcript: ENSMUST00000195657.5
Gencode Gene: ENSMUSG00000050144.13
Transcript (Including UTRs)
   Position: mm10 chr3:88,410,499-88,425,112 Size: 14,614 Total Exon Count: 4 Strand: -
Coding Region
   Position: mm10 chr3:88,412,706-88,421,125 Size: 8,420 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther NamesModel Information
Methods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:88,410,499-88,425,112)mRNA (may differ from genome)Protein (314 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedSOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: S2544_MOUSE
DESCRIPTION: RecName: Full=Solute carrier family 25 member 44;
SUBCELLULAR LOCATION: Mitochondrion inner membrane; Multi-pass membrane protein (By similarity).
SIMILARITY: Belongs to the mitochondrial carrier family.
SIMILARITY: Contains 3 Solcar repeats.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -142.90352-0.406 Picture PostScript Text
3' UTR -716.572207-0.325 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002067 - Mit_carrier
IPR018108 - Mitochondrial_sb/sol_carrier
IPR023395 - Mt_carrier_dom

Pfam Domains:
PF00153 - Mitochondrial carrier protein

SCOP Domains:
103506 - Mitochondrial carrier

ModBase Predicted Comparative 3D Structure on Q8BGF9
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
 RGD    
 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0022857 transmembrane transporter activity

Biological Process:
GO:0006839 mitochondrial transport
GO:0055085 transmembrane transport

Cellular Component:
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0031307 integral component of mitochondrial outer membrane


-  Descriptions from all associated GenBank mRNAs
  AK197940 - Mus musculus cDNA, clone:Y1G0126K03, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000057935, based on BLAT search.
BC012234 - Mus musculus solute carrier family 25, member 44, mRNA (cDNA clone MGC:19319 IMAGE:4191504), complete cds.
BC052771 - Mus musculus solute carrier family 25, member 44, mRNA (cDNA clone MGC:56884 IMAGE:6310271), complete cds.
AK044648 - Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930029J19 product:hypothetical Mitochondrial energy transfer proteins (carrier protein) containing protein, full insert sequence.
AK165159 - Mus musculus 8 cells embryo 8 cells cDNA, RIKEN full-length enriched library, clone:E860006G23 product:Hypothetical mitochondrial energy transfer proteins homolog [Mus musculus], full insert sequence.
AK083470 - Mus musculus 9 days embryo whole body cDNA, RIKEN full-length enriched library, clone:D030022M20 product:hypothetical Mitochondrial energy transfer proteins (carrier protein) containing protein, full insert sequence.
AK168955 - Mus musculus 16 days embryo kidney cDNA, RIKEN full-length enriched library, clone:I920067E18 product:Hypothetical mitochondrial energy transfer proteins, full insert sequence.
AK032960 - Mus musculus 12 days embryo male wolffian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6720482A19 product:hypothetical Mitochondrial energy transfer proteins (carrier protein) containing protein, full insert sequence.
AK170066 - Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630014G14 product:hypothetical protein, full insert sequence.
AK046586 - Mus musculus 4 days neonate male adipose cDNA, RIKEN full-length enriched library, clone:B430110G05 product:hypothetical Mitochondrial energy transfer proteins (carrier protein) containing protein, full insert sequence.
AK079532 - Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230028I01 product:hypothetical Mitochondrial energy transfer proteins (carrier protein) containing protein, full insert sequence.
AK083273 - Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched library, clone:C630032N01 product:hypothetical Mitochondrial energy transfer proteins (carrier protein) containing protein, full insert sequence.
AK144731 - Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched library, clone:G730028A09 product:Hypothetical mitochondrial energy transfer proteins, full insert sequence.
AK166011 - Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched library, clone:G730029G03 product:Hypothetical mitochondrial energy transfer proteins, full insert sequence.
AK134914 - Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430515K14 product:Hypothetical mitochondrial energy transfer proteins, full insert sequence.
AK190462 - Mus musculus cDNA, clone:Y1G0102N05, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000057935, based on BLAT search.
AK193779 - Mus musculus cDNA, clone:Y1G0113F10, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000057935, based on BLAT search.
AK169886 - Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630002J08 product:Hypothetical mitochondrial energy transfer proteins, full insert sequence.
AK166331 - Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDNA, RIKEN full-length enriched library, clone:G830041L17 product:Hypothetical mitochondrial energy transfer proteins, full insert sequence.
AK215205 - Mus musculus cDNA, clone:Y2G0134E23, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000057935, based on BLAT search.
AK180916 - Mus musculus cDNA, clone:Y0G0116F07, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000057935, based on BLAT search.
AK188279 - Mus musculus cDNA, clone:Y0G0144K11, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000057935, based on BLAT search.
AK205212 - Mus musculus cDNA, clone:Y2G0101A01, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000057935, based on BLAT search.
DQ546973 - Mus musculus piRNA piR-15085, complete sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: NM_001145876, Q7TSU9, Q8BGF9, S2544_MOUSE, uc008pvd.1, uc008pvd.2, uc008pvd.3, uc008pvd.4
UCSC ID: uc008pvd.4
RefSeq Accession: NM_001145876
Protein: Q8BGF9 (aka S2544_MOUSE)
CCDS: CCDS79943.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.