Human Gene LINC00330 (ENST00000414562.1) from GENCODE V44
  Description: Homo sapiens long intergenic non-protein coding RNA 330 (LINC00330), long non-coding RNA. (from RefSeq NR_038433)
Gencode Transcript: ENST00000414562.1
Gencode Gene: ENSG00000235097.1
Transcript (Including UTRs)
   Position: hg38 chr13:44,799,503-44,809,630 Size: 10,128 Total Exon Count: 3 Strand: -


Page IndexSequence and LinksPrimersRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr13:44,799,503-44,809,630)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
EnsemblEntrez GeneExonPrimerGencodeHGNCLynx
PubMedBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 2.22 RPKM in Esophagus - Mucosa
Total median expression: 4.36 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK056732 - Homo sapiens cDNA FLJ32170 fis, clone PLACE6000550.
JD533320 - Sequence 514344 from Patent EP1572962.
JD076524 - Sequence 57548 from Patent EP1572962.
JD123140 - Sequence 104164 from Patent EP1572962.
JD360398 - Sequence 341422 from Patent EP1572962.
JD553091 - Sequence 534115 from Patent EP1572962.
JD332065 - Sequence 313089 from Patent EP1572962.
JD298505 - Sequence 279529 from Patent EP1572962.
JD281732 - Sequence 262756 from Patent EP1572962.
JD232948 - Sequence 213972 from Patent EP1572962.
JD223671 - Sequence 204695 from Patent EP1572962.
JD279348 - Sequence 260372 from Patent EP1572962.
JD452574 - Sequence 433598 from Patent EP1572962.
JD333400 - Sequence 314424 from Patent EP1572962.
JD440766 - Sequence 421790 from Patent EP1572962.
JD063122 - Sequence 44146 from Patent EP1572962.
JD421472 - Sequence 402496 from Patent EP1572962.
JD514925 - Sequence 495949 from Patent EP1572962.
JD294120 - Sequence 275144 from Patent EP1572962.
JD257021 - Sequence 238045 from Patent EP1572962.
JD199464 - Sequence 180488 from Patent EP1572962.
JD325419 - Sequence 306443 from Patent EP1572962.
JD237683 - Sequence 218707 from Patent EP1572962.
JD258133 - Sequence 239157 from Patent EP1572962.
JD417437 - Sequence 398461 from Patent EP1572962.
JD228630 - Sequence 209654 from Patent EP1572962.
JD548041 - Sequence 529065 from Patent EP1572962.
JD143421 - Sequence 124445 from Patent EP1572962.
JD228629 - Sequence 209653 from Patent EP1572962.
JD558556 - Sequence 539580 from Patent EP1572962.
JD430859 - Sequence 411883 from Patent EP1572962.
JD087470 - Sequence 68494 from Patent EP1572962.
JD110904 - Sequence 91928 from Patent EP1572962.
JD154281 - Sequence 135305 from Patent EP1572962.
JD136813 - Sequence 117837 from Patent EP1572962.
JD200660 - Sequence 181684 from Patent EP1572962.
JD305492 - Sequence 286516 from Patent EP1572962.
JD396813 - Sequence 377837 from Patent EP1572962.
JD281517 - Sequence 262541 from Patent EP1572962.
JD165308 - Sequence 146332 from Patent EP1572962.
JD546434 - Sequence 527458 from Patent EP1572962.
JD068222 - Sequence 49246 from Patent EP1572962.
JD479692 - Sequence 460716 from Patent EP1572962.
JD039492 - Sequence 20516 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_038433, uc021rjc.1, uc021rjc.2
UCSC ID: ENST00000414562.1
RefSeq Accession: NR_038433

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.