Schema for Gap - Gap Locations
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Database: sacCer3 Primary Table: gap Row Count: 0   Data last updated: 2011-08-24
Format description: Gaps in golden path On download server: MariaDB table dump directory
field | SQL type | info | description |
bin | smallint(6) | range | Indexing field to speed chromosome range queries. |
chrom | varchar(255) | values | Reference sequence chromosome or scaffold |
chromStart | int(10) unsigned | range | start position in chromosome |
chromEnd | int(10) unsigned | range | end position in chromosome |
ix | int(11) | range | index count of this fragment (obsolete/useless) |
n | char(1) | values | 'N' for gaps of known size, 'U' for gaps of unknown size |
size | int(10) unsigned | range | size of gap |
type | varchar(255) | values | scaffold, contig, clone, fragment, etc. |
bridge | varchar(255) | values | yes, no, mrna, bacEndPair, etc. |
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Sample Rows
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bin | chrom | chromStart | chromEnd | ix | n | size | type | bridge |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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Gap (gap) Track Description
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