Schema for mrnaOrientInfo
  Database: bosTau4    Primary Table: mrnaOrientInfo    Row Count: 35,831   Data last updated: 2020-08-20
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 587smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 327876int(10) unsigned range Start position in chromosome
chromEnd 339078int(10) unsigned range End position in chromosome
name BC103185varchar(255) values Accession of EST
intronOrientation 3smallint(6) range Orientation of introns with respect to EST
sizePolyA 68smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 94smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        bosTau4.all_mrna.qName (via mrnaOrientInfo.name)
      bosTau4.mgcFullMrna.qName (via mrnaOrientInfo.name)
      bosTau4.mgcGenes.name (via mrnaOrientInfo.name)
      bosTau4.refFlat.name (via mrnaOrientInfo.name)
      bosTau4.refGene.name (via mrnaOrientInfo.name)
      bosTau4.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
587chr1327876339078BC1031853680940
587chr1327895339076BT030515300240
587chr1377375383871BC1128732112000
588chr1436007437027BC110185016000
588chr1439762455196BC1461343160410
588chr1460824468632BC1116621140360
590chr1720698728057M18753600230
590chr1720700728056BC102204616100
590chr1720722727895AB09908060000
590chr1725479728053AB098834-310023

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.