Schema for estOrientInfo
  Database: canFam6    Primary Table: estOrientInfo    Row Count: 380,657   Data last updated: 2021-05-18
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 1439smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 112038808int(10) unsigned range Start position in chromosome
chromEnd 112046817int(10) unsigned range End position in chromosome
name AB042265varchar(255) values Accession of EST
intronOrientation 3smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        canFam6.all_est.qName (via estOrientInfo.name)
      canFam6.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
1439chr1112038808112046817AB04226530000
719chr191761654217627925AB04226410000
817chr363041153830413892AB04226650000
705chr11575738115757945AJ53689900400
705chr11575811615758632AJ536900001200
722chr11799550317996375AJ536893-1010031
753chr12211889722119380AJ53737700000
803chr12858476028585334AJ5369010230470
861chr13626846636269748AJ536902-302000
868chr13711667237117149AJ53689600000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.