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Database: enhLutNer1 Primary Table: all_mrna Row Count: 5   Data last updated: 2020-02-26
Format description: Summary info about a patSpace alignment On download server: MariaDB table dump directory
field | example | SQL type | info | description |
bin | 647 | smallint(5) unsigned | range | Indexing field to speed chromosome range queries. |
matches | 654 | int(10) unsigned | range | Number of bases that match that aren't repeats |
misMatches | 3 | int(10) unsigned | range | Number of bases that don't match |
repMatches | 0 | int(10) unsigned | range | Number of bases that match but are part of repeats |
nCount | 0 | int(10) unsigned | range | Number of 'N' bases |
qNumInsert | 0 | int(10) unsigned | range | Number of inserts in query |
qBaseInsert | 0 | int(10) unsigned | range | Number of bases inserted in query |
tNumInsert | 3 | int(10) unsigned | range | Number of inserts in target |
tBaseInsert | 2855 | int(10) unsigned | range | Number of bases inserted in target |
strand | - | char(2) | values | + or - for strand. First character query, second target (optional) |
qName | L46804 | varchar(255) | values | Query sequence name |
qSize | 676 | int(10) unsigned | range | Query sequence size |
qStart | 6 | int(10) unsigned | range | Alignment start position in query |
qEnd | 663 | int(10) unsigned | range | Alignment end position in query |
tName | QQQE01000072v1 | varchar(255) | values | Target sequence name |
tSize | 41754487 | int(10) unsigned | range | Target sequence size |
tStart | 8198467 | int(10) unsigned | range | Alignment start position in target |
tEnd | 8201979 | int(10) unsigned | range | Alignment end position in target |
blockCount | 4 | int(10) unsigned | range | Number of blocks in alignment |
blockSizes | 200,147,114,196, | longblob | | Size of each block |
qStarts | 13,213,360,474, | longblob | | Start of each block in query. |
tStarts | 8198467,8199687,8200532,820... | longblob | | Start of each block in target. |
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Connected Tables and Joining Fields
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Sample Rows
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bin | matches | misMatches | repMatches | nCount | qNumInsert | qBaseInsert | tNumInsert | tBaseInsert | strand | qName | qSize | qStart | qEnd | tName | tSize | tStart | tEnd | blockCount | blockSizes | qStarts | tStarts |
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647 | 654 | 3 | 0 | 0 | 0 | 0 | 3 | 2855 | - | L46804 | 676 | 6 | 663 | QQQE01000072v1 | 41754487 | 8198467 | 8201979 | 4 | 200,147,114,196, | 13,213,360,474, | 8198467,8199687,8200532,8201783, |
614 | 407 | 2 | 0 | 0 | 0 | 0 | 1 | 300 | - | AY884353 | 409 | 0 | 409 | QQQE01000220v1 | 3981722 | 3866545 | 3867254 | 2 | 78,331, | 0,78, | 3866545,3866923, |
595 | 971 | 0 | 0 | 0 | 0 | 0 | 4 | 3970 | - | AY883931 | 972 | 1 | 972 | QQQE01000248v1 | 3142930 | 1413601 | 1418542 | 5 | 78,240,166,169,318, | 0,78,318,484,653, | 1413601,1414523,1414863,1416318,1418224, |
73 | 988 | 0 | 0 | 0 | 0 | 0 | 5 | 10889 | + | AY884350 | 988 | 0 | 988 | QQQE01000297v1 | 2048377 | 776553 | 788430 | 6 | 47,297,169,166,240,69, | 0,47,344,513,679,919, | 776553,780512,783205,784581,785701,788361, |
585 | 1395 | 13 | 0 | 0 | 0 | 0 | 5 | 1198 | + | EF619959 | 1554 | 0 | 1408 | QQQE01018982v1 | 3280 | 674 | 3280 | 6 | 840,127,90,124,87,140, | 0,840,967,1057,1181,1268, | 674,2021,2236,2635,2890,3140, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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