Schema for all_mrna
  Database: sorAra1    Primary Table: all_mrna    Row Count: 8   Data last updated: 2016-04-18
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 526int(10) unsigned range Number of bases that match that aren't repeats
misMatches 16int(10) unsigned range Number of bases that don't match
repMatches 22int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 1int(10) unsigned range Number of inserts in query
qBaseInsert 1int(10) unsigned range Number of bases inserted in query
tNumInsert 4int(10) unsigned range Number of inserts in target
tBaseInsert 3294int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName AB047248varchar(255) values Query sequence name
qSize 1425int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 565int(10) unsigned range Alignment end position in query
tName scaffold_139494varchar(255) values Target sequence name
tSize 4982int(10) unsigned range Target sequence size
tStart 0int(10) unsigned range Alignment start position in target
tEnd 3858int(10) unsigned range Alignment end position in target
blockCount 6int(10) unsigned range Number of blocks in alignment
blockSizes 71,119,118,151,85,20,longblob   Size of each block
qStarts 860,931,1050,1168,1319,1405,longblob   Start of each block in query.
tStarts 0,411,776,990,3753,3838,longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)
      sorAra1.mrnaOrientInfo.name (via all_mrna.qName)
      sorAra1.xenoRefGene.name (via all_mrna.qName)
      sorAra1.xenoRefSeqAli.qName (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585526162201143294-AB04724814250565scaffold_139494498203858671,119,118,151,85,20,860,931,1050,1168,1319,1405,0,411,776,990,3753,3838,
5851928001151557-AB0472481425617818scaffold_13983955523795555278,4,18,57,31,5,77,607,615,620,638,695,726,731,3795,3804,3808,3827,3885,3956,5475,
585984000000+AY1344715470102scaffold_2319784284420591206931102,0,20591,
5855971770436033725+AB04724413813561337scaffold_23841150479044366119,200,196,41,12,53,356,475,1029,1229,1271,1284,90,494,4131,4330,4371,4383,
5865208000036365+AJ2231495520528scaffold_256709188638168119175012469,131,136,192,0,69,200,336,168119,169067,171274,174820,
5851173000000-AY134471547350470scaffold_257970569062033231120,77,203,
58521412000000+KC52474346592318scaffold_816166813465721226,92,346,
5852857000000-AB047248142510641356scaffold_9907912204677591292,69,467,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.