Schema for mrnaOrientInfo
  Database: ci1    Primary Table: mrnaOrientInfo    Row Count: 10,235   Data last updated: 2020-08-21
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom Scaffold_1varchar(255) values Reference sequence chromosome or scaffold
chromStart 5494int(10) unsigned range Start position in chromosome
chromEnd 8004int(10) unsigned range End position in chromosome
name AK174651varchar(255) values Accession of EST
intronOrientation 4smallint(6) range Orientation of introns with respect to EST
sizePolyA 102smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 123smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        ci1.all_mrna.qName (via mrnaOrientInfo.name)
      ci1.refFlat.name (via mrnaOrientInfo.name)
      ci1.refGene.name (via mrnaOrientInfo.name)
      ci1.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585Scaffold_154948004AK174651410201230
585Scaffold_11472319054AK112650518000
585Scaffold_12649431469AB196473130000
585Scaffold_12649431469NM_001033828130000
585Scaffold_13235534568AK173911380280
585Scaffold_16073764626AK1134115180026
585Scaffold_17648383787AK11666611520710
585Scaffold_18080683790AK1738354161320
586Scaffold_1133310144766AK1144991380340
586Scaffold_1135711144759AK116523960250

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.