Schema for estOrientInfo
  Database: dp3    Primary Table: estOrientInfo    Row Count: 32,820   Data last updated: 2016-05-23
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr2varchar(255) values Reference sequence chromosome or scaffold
chromStart 81388int(10) unsigned range Start position in chromosome
chromEnd 83325int(10) unsigned range End position in chromosome
name CX160287varchar(255) values Accession of EST
intronOrientation 2smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        dp3.all_est.qName (via estOrientInfo.name)
      dp3.est.qName (via estOrientInfo.name)
      dp3.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr28138883325CX16028720000
585chr28238584497CX16041820000
589chr2574313575749CX16053140000
590chr2685179685405CX15998900000
592chr2930979931597CX16036820000
592chr2930979931791CX16058520000
593chr210822801083733CX16003830000
593chr210823371083834CX1599023100360
593chr210823381083692CX15996230000
593chr210826121083398CX16056410000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.