|
|---|
| |
Database: droYak2 Primary Table: all_mrna Row Count: 901 Data last updated: 2019-06-29
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
| field | example | SQL type | info | description |
|---|
| bin | 586 | smallint(5) unsigned | range | Indexing field to speed chromosome range queries. |
| matches | 299 | int(10) unsigned | range | Number of bases that match that aren't repeats |
| misMatches | 4 | int(10) unsigned | range | Number of bases that don't match |
| repMatches | 0 | int(10) unsigned | range | Number of bases that match but are part of repeats |
| nCount | 0 | int(10) unsigned | range | Number of 'N' bases |
| qNumInsert | 0 | int(10) unsigned | range | Number of inserts in query |
| qBaseInsert | 0 | int(10) unsigned | range | Number of bases inserted in query |
| tNumInsert | 1 | int(10) unsigned | range | Number of inserts in target |
| tBaseInsert | 73 | int(10) unsigned | range | Number of bases inserted in target |
| strand | + | char(2) | values | + or - for strand. First character query, second target (optional) |
| qName | AY232141 | varchar(255) | values | Query sequence name |
| qSize | 303 | int(10) unsigned | range | Query sequence size |
| qStart | 0 | int(10) unsigned | range | Alignment start position in query |
| qEnd | 303 | int(10) unsigned | range | Alignment end position in query |
| tName | chr2L | varchar(255) | values | Target sequence name |
| tSize | 22324452 | int(10) unsigned | range | Target sequence size |
| tStart | 144946 | int(10) unsigned | range | Alignment start position in target |
| tEnd | 145322 | int(10) unsigned | range | Alignment end position in target |
| blockCount | 2 | int(10) unsigned | range | Number of blocks in alignment |
| blockSizes | 213,90, | longblob | | Size of each block |
| qStarts | 0,213, | longblob | | Start of each block in query. |
| tStarts | 144946,145232, | longblob | | Start of each block in target. |
|
| |
|
|
|
Connected Tables and Joining Fields
|
|
|
Sample Rows
|
|---|
| |
| bin | matches | misMatches | repMatches | nCount | qNumInsert | qBaseInsert | tNumInsert | tBaseInsert | strand | qName | qSize | qStart | qEnd | tName | tSize | tStart | tEnd | blockCount | blockSizes | qStarts | tStarts |
|---|
| 586 | 299 | 4 | 0 | 0 | 0 | 0 | 1 | 73 | + | AY232141 | 303 | 0 | 303 | chr2L | 22324452 | 144946 | 145322 | 2 | 213,90, | 0,213, | 144946,145232, |
| 588 | 333 | 3 | 0 | 0 | 0 | 0 | 1 | 148 | + | AY231791 | 336 | 0 | 336 | chr2L | 22324452 | 404413 | 404897 | 2 | 72,264, | 0,72, | 404413,404633, |
| 597 | 469 | 5 | 0 | 0 | 0 | 0 | 1 | 522 | - | AY232041 | 474 | 0 | 474 | chr2L | 22324452 | 1586492 | 1587488 | 2 | 380,94, | 0,380, | 1586492,1587394, |
| 601 | 447 | 9 | 0 | 0 | 0 | 0 | 0 | 0 | - | AY232122 | 456 | 0 | 456 | chr2L | 22324452 | 2226212 | 2226668 | 1 | 456, | 0, | 2226212, |
| 602 | 447 | 9 | 0 | 0 | 0 | 0 | 0 | 0 | - | AY232122 | 456 | 0 | 456 | chr2L | 22324452 | 2232715 | 2233171 | 1 | 456, | 0, | 2232715, |
| 602 | 604 | 5 | 0 | 0 | 0 | 0 | 2 | 129 | - | AY232029 | 609 | 0 | 609 | chr2L | 22324452 | 2355591 | 2356329 | 3 | 109,292,208, | 0,109,401, | 2355591,2355757,2356121, |
| 603 | 1563 | 0 | 0 | 0 | 0 | 0 | 3 | 126 | + | AJ868232 | 1563 | 0 | 1563 | chr2L | 22324452 | 2365911 | 2367600 | 4 | 45,923,207,388, | 0,45,968,1175, | 2365911,2365971,2366949,2367212, |
| 604 | 1114 | 11 | 0 | 0 | 0 | 0 | 1 | 62 | - | AF532007 | 1125 | 0 | 1125 | chr2L | 22324452 | 2562463 | 2563650 | 2 | 1116,9, | 0,1116, | 2562463,2563641, |
| 604 | 421 | 5 | 0 | 0 | 0 | 0 | 3 | 192 | - | AY232196 | 426 | 0 | 426 | chr2L | 22324452 | 2566823 | 2567441 | 4 | 68,85,178,95, | 0,68,153,331, | 2566823,2566948,2567105,2567346, |
| 605 | 342 | 0 | 114 | 0 | 0 | 0 | 2 | 2389 | + | AY231858 | 456 | 0 | 456 | chr2L | 22324452 | 2748948 | 2751793 | 3 | 246,163,47, | 0,246,409, | 2748948,2751514,2751746, |
|
Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
| |
|
|
|
US Server