Schema for xenoRefSeqAli
  Database: gorGor6    Primary Table: xenoRefSeqAli    Row Count: 329,551   Data last updated: 2020-05-06
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 2413int(10) unsigned range Number of bases that match that aren't repeats
misMatches 26int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 2int(10) unsigned range Number of inserts in query
qBaseInsert 4int(10) unsigned range Number of bases inserted in query
tNumInsert 10int(10) unsigned range Number of inserts in target
tBaseInsert 9408int(10) unsigned range Number of bases inserted in target
strand +-char(2) values + or - for strand. First character query, second target (optional)
qName NM_001350497varchar(255) values Query sequence name
qSize 2889int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 2443int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 219763114int(10) unsigned range Target sequence size
tStart 1534int(10) unsigned range Alignment start position in target
tEnd 13381int(10) unsigned range Alignment end position in target
blockCount 13int(10) unsigned range Number of blocks in alignment
blockSizes 110,144,65,125,100,105,142,...longblob   Size of each block
qStarts 0,110,254,319,444,544,649,7...longblob   Start of each block in query.
tStarts 219749733,219752528,2197545...longblob   Start of each block in target.

Connected Tables and Joining Fields
        gorGor6.all_mrna.qName (via xenoRefSeqAli.qName)
      gorGor6.refGene.name (via xenoRefSeqAli.qName)
      gorGor6.refSeqAli.qName (via xenoRefSeqAli.qName)
      gorGor6.xenoRefFlat.name (via xenoRefSeqAli.qName)
      gorGor6.xenoRefGene.name (via xenoRefSeqAli.qName)
      hgFixed.gbCdnaInfo.acc (via xenoRefSeqAli.qName)
      hgFixed.gbMiscDiff.acc (via xenoRefSeqAli.qName)
      hgFixed.gbSeq.acc (via xenoRefSeqAli.qName)
      hgFixed.gbWarn.acc (via xenoRefSeqAli.qName)
      hgFixed.imageClone.acc (via xenoRefSeqAli.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5852413260024109408+-NM_001350497288902443chr121976311415341338113110,144,65,125,100,105,142,112,93,451,406,411,175,0,110,254,319,444,544,649,791,903,996,1447,1855,2268,219749733,219752528,219754586,219755243,219757167,219757470,219757662,219759652,219759848,219760135,219760588,219760994,21976140 ...
58533073400368149492+-NM_001320153383623411chr12197631141534143671727,224,75,110,121,65,14,671,139,105,142,112,93,451,406,411,175,2,93,317,392,502,623,688,702,1373,1512,1617,1759,1871,1964,2415,2823,3236,219748747,219748832,219749403,219749733,219752551,219754586,219755243,219756456,219757128,219757470,219757662,219759652,21975984 ...
585260625003681310202+-NM_001320155312622701chr12197631141534143671627,224,75,110,121,65,14,100,105,142,112,93,451,406,411,175,2,93,317,392,502,623,688,702,802,907,1049,1161,1254,1705,2113,2526,219748747,219748832,219749403,219749733,219752551,219754586,219755243,219757167,219757470,219757662,219759652,219759848,21976013 ...
585271626003681310091+-NM_001350498323722812chr12197631141534143671627,224,75,110,121,65,125,100,105,142,112,93,451,406,411,175,2,93,317,392,502,623,688,813,913,1018,1160,1272,1365,1816,2224,2637,219748747,219748832,219749403,219749733,219752551,219754586,219755243,219757167,219757470,219757662,219759652,219759848,21976013 ...
58529922900368149812+-NM_001350499351623091chr12197631141534143671727,224,75,110,121,65,125,279,100,105,142,112,93,451,406,411,175,2,93,317,392,502,623,688,813,1092,1192,1297,1439,1551,1644,2095,2503,2916,219748747,219748832,219749403,219749733,219752551,219754586,219755243,219756456,219757167,219757470,219757662,219759652,21975984 ...
58528783200368149923+-NM_001350500340522980chr12197631141534143671727,224,75,110,121,65,14,279,100,105,142,112,93,451,406,407,179,2,93,317,392,502,623,688,702,981,1081,1186,1328,1440,1533,1984,2392,2801,219748747,219748832,219749403,219749733,219752551,219754586,219755243,219756456,219757167,219757470,219757662,219759652,21975984 ...
585259225003681210216+-NM_030937311222687chr12197631141534143671527,224,75,110,121,65,100,105,142,112,93,451,406,411,175,2,93,317,392,502,623,688,788,893,1035,1147,1240,1691,2099,2512,219748747,219748832,219749403,219749733,219752551,219754586,219757167,219757470,219757662,219759652,219759848,219760135,21976058 ...
585448069007290148284+-NR_135154526624841chr12197631141534143672027,224,75,110,121,65,583,189,285,92,734,139,105,150,114,93,451,406,407,179,2,93,317,392,502,623,688,1271,1461,1747,1853,2587,2726,2831,3187,3301,3394,3845,4253,4662,219748747,219748832,219749403,219749733,219752551,219754586,219755243,219755827,219756016,219756301,219756393,219757128,21975747 ...
585299430004183149809+-NR_146722363423209chr12197631141534143671727,224,75,110,121,65,125,279,100,105,143,114,93,451,406,411,175,2,93,317,392,502,623,688,813,1092,1192,1297,1555,1669,1762,2213,2621,3034,219748747,219748832,219749403,219749733,219752551,219754586,219755243,219756456,219757167,219757470,219757662,219759650,21975984 ...
585341936004202149378+-NR_146723408423659chr12197631141534143671727,224,75,110,121,65,125,671,139,105,143,114,93,451,406,411,175,2,93,317,392,502,623,688,813,1484,1623,1728,2005,2119,2212,2663,3071,3484,219748747,219748832,219749403,219749733,219752551,219754586,219755243,219756456,219757128,219757470,219757662,219759650,21975984 ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.