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Database: rn3 Primary Table: all_mrna Row Count: 126,150   Data last updated: 2020-08-22
Format description: Summary info about a patSpace alignment On download server: MariaDB table dump directory
field | example | SQL type | info | description |
bin | 585 | smallint(5) unsigned | range | Indexing field to speed chromosome range queries. |
matches | 30 | int(10) unsigned | range | Number of bases that match that aren't repeats |
misMatches | 0 | int(10) unsigned | range | Number of bases that don't match |
repMatches | 0 | int(10) unsigned | range | Number of bases that match but are part of repeats |
nCount | 0 | int(10) unsigned | range | Number of 'N' bases |
qNumInsert | 0 | int(10) unsigned | range | Number of inserts in query |
qBaseInsert | 0 | int(10) unsigned | range | Number of bases inserted in query |
tNumInsert | 0 | int(10) unsigned | range | Number of inserts in target |
tBaseInsert | 0 | int(10) unsigned | range | Number of bases inserted in target |
strand | + | char(2) | values | + or - for strand. First character query, second target (optional) |
qName | DQ763579 | varchar(255) | values | Query sequence name |
qSize | 30 | int(10) unsigned | range | Query sequence size |
qStart | 0 | int(10) unsigned | range | Alignment start position in query |
qEnd | 30 | int(10) unsigned | range | Alignment end position in query |
tName | chr1 | varchar(255) | values | Target sequence name |
tSize | 268121971 | int(10) unsigned | range | Target sequence size |
tStart | 29100 | int(10) unsigned | range | Alignment start position in target |
tEnd | 29130 | int(10) unsigned | range | Alignment end position in target |
blockCount | 1 | int(10) unsigned | range | Number of blocks in alignment |
blockSizes | 30, | longblob | | Size of each block |
qStarts | 0, | longblob | | Start of each block in query. |
tStarts | 29100, | longblob | | Start of each block in target. |
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Connected Tables and Joining Fields
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Sample Rows
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bin | matches | misMatches | repMatches | nCount | qNumInsert | qBaseInsert | tNumInsert | tBaseInsert | strand | qName | qSize | qStart | qEnd | tName | tSize | tStart | tEnd | blockCount | blockSizes | qStarts | tStarts |
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585 | 30 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | DQ763579 | 30 | 0 | 30 | chr1 | 268121971 | 29100 | 29130 | 1 | 30, | 0, | 29100, |
585 | 30 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | DQ763579 | 30 | 0 | 30 | chr1 | 268121971 | 41645 | 41675 | 1 | 30, | 0, | 41645, |
585 | 260 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | - | DQ255910 | 261 | 0 | 261 | chr1 | 268121971 | 128612 | 128873 | 1 | 261, | 0, | 128612, |
586 | 30 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - | DQ763579 | 30 | 0 | 30 | chr1 | 268121971 | 226886 | 226916 | 1 | 30, | 0, | 226886, |
586 | 30 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - | DQ763579 | 30 | 0 | 30 | chr1 | 268121971 | 228276 | 228306 | 1 | 30, | 0, | 228276, |
586 | 669 | 9 | 0 | 0 | 0 | 0 | 0 | 0 | + | FQ226869 | 694 | 0 | 678 | chr1 | 268121971 | 234634 | 235312 | 1 | 678, | 0, | 234634, |
586 | 674 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | + | FQ232372 | 695 | 0 | 678 | chr1 | 268121971 | 234634 | 235312 | 1 | 678, | 0, | 234634, |
587 | 30 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - | DQ742249 | 30 | 0 | 30 | chr1 | 268121971 | 387210 | 387240 | 1 | 30, | 0, | 387210, |
589 | 30 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | DQ617979 | 30 | 0 | 30 | chr1 | 268121971 | 551903 | 551933 | 1 | 30, | 0, | 551903, |
589 | 87 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - | U25478 | 113 | 0 | 87 | chr1 | 268121971 | 556699 | 556786 | 1 | 87, | 26, | 556699, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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