|
|
Database: droYak1 Primary Table: all_mrna Row Count: 921   Data last updated: 2019-06-30
Format description: Summary info about a patSpace alignment On download server: MariaDB table dump directory
field | example | SQL type | info | description |
bin | 586 | smallint(5) unsigned | range | Indexing field to speed chromosome range queries. |
matches | 299 | int(10) unsigned | range | Number of bases that match that aren't repeats |
misMatches | 4 | int(10) unsigned | range | Number of bases that don't match |
repMatches | 0 | int(10) unsigned | range | Number of bases that match but are part of repeats |
nCount | 0 | int(10) unsigned | range | Number of 'N' bases |
qNumInsert | 0 | int(10) unsigned | range | Number of inserts in query |
qBaseInsert | 0 | int(10) unsigned | range | Number of bases inserted in query |
tNumInsert | 1 | int(10) unsigned | range | Number of inserts in target |
tBaseInsert | 73 | int(10) unsigned | range | Number of bases inserted in target |
strand | + | char(2) | values | + or - for strand. First character query, second target (optional) |
qName | AY232141 | varchar(255) | values | Query sequence name |
qSize | 303 | int(10) unsigned | range | Query sequence size |
qStart | 0 | int(10) unsigned | range | Alignment start position in query |
qEnd | 303 | int(10) unsigned | range | Alignment end position in query |
tName | chr2L | varchar(255) | values | Target sequence name |
tSize | 22678881 | int(10) unsigned | range | Target sequence size |
tStart | 149475 | int(10) unsigned | range | Alignment start position in target |
tEnd | 149851 | int(10) unsigned | range | Alignment end position in target |
blockCount | 2 | int(10) unsigned | range | Number of blocks in alignment |
blockSizes | 213,90, | longblob | | Size of each block |
qStarts | 0,213, | longblob | | Start of each block in query. |
tStarts | 149475,149761, | longblob | | Start of each block in target. |
|
| |
|
|
Connected Tables and Joining Fields
|
|
Sample Rows
|
|
bin | matches | misMatches | repMatches | nCount | qNumInsert | qBaseInsert | tNumInsert | tBaseInsert | strand | qName | qSize | qStart | qEnd | tName | tSize | tStart | tEnd | blockCount | blockSizes | qStarts | tStarts |
---|
586 | 299 | 4 | 0 | 0 | 0 | 0 | 1 | 73 | + | AY232141 | 303 | 0 | 303 | chr2L | 22678881 | 149475 | 149851 | 2 | 213,90, | 0,213, | 149475,149761, |
588 | 333 | 3 | 0 | 0 | 0 | 0 | 1 | 148 | + | AY231791 | 336 | 0 | 336 | chr2L | 22678881 | 412663 | 413147 | 2 | 72,264, | 0,72, | 412663,412883, |
597 | 469 | 5 | 0 | 0 | 0 | 0 | 1 | 522 | - | AY232041 | 474 | 0 | 474 | chr2L | 22678881 | 1608085 | 1609081 | 2 | 380,94, | 0,380, | 1608085,1608987, |
602 | 447 | 9 | 0 | 0 | 0 | 0 | 0 | 0 | - | AY232122 | 456 | 0 | 456 | chr2L | 22678881 | 2253123 | 2253579 | 1 | 456, | 0, | 2253123, |
602 | 447 | 9 | 0 | 0 | 0 | 0 | 0 | 0 | - | AY232122 | 456 | 0 | 456 | chr2L | 22678881 | 2259626 | 2260082 | 1 | 456, | 0, | 2259626, |
603 | 604 | 5 | 0 | 0 | 0 | 0 | 2 | 129 | - | AY232029 | 609 | 0 | 609 | chr2L | 22678881 | 2384659 | 2385397 | 3 | 109,292,208, | 0,109,401, | 2384659,2384825,2385189, |
603 | 1563 | 0 | 0 | 0 | 0 | 0 | 3 | 126 | + | AJ868232 | 1563 | 0 | 1563 | chr2L | 22678881 | 2394979 | 2396668 | 4 | 45,923,207,388, | 0,45,968,1175, | 2394979,2395039,2396017,2396280, |
604 | 1114 | 11 | 0 | 0 | 0 | 0 | 1 | 62 | - | AF532007 | 1125 | 0 | 1125 | chr2L | 22678881 | 2592600 | 2593787 | 2 | 1116,9, | 0,1116, | 2592600,2593778, |
604 | 421 | 5 | 0 | 0 | 0 | 0 | 3 | 192 | - | AY232196 | 426 | 0 | 426 | chr2L | 22678881 | 2596960 | 2597578 | 4 | 68,85,178,95, | 0,68,153,331, | 2596960,2597085,2597242,2597483, |
606 | 456 | 0 | 0 | 0 | 0 | 0 | 2 | 2389 | + | AY231858 | 456 | 0 | 456 | chr2L | 22678881 | 2779956 | 2782801 | 3 | 246,163,47, | 0,246,409, | 2779956,2782522,2782754, |
|
Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
| |
|
|
|