Schema for mrnaOrientInfo
  Database: myoLuc2    Primary Table: mrnaOrientInfo    Row Count: 41   Data last updated: 2017-09-09
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom AAPE02063704varchar(255) values Reference sequence chromosome or scaffold
chromStart 336int(10) unsigned range Start position in chromosome
chromEnd 1168int(10) unsigned range End position in chromosome
name HM134936varchar(255) values Accession of EST
intronOrientation 1smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      myoLuc2.all_mrna.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585AAPE020637043361168HM13493610000
585AAPE0207154210981590EU04471923100
903GL4297674168954741693764KJ01008310000
903GL4297674168954741693764KJ01008410000
903GL4297674168954741693764KJ01008510000
807GL4297692913382929134468KF90644700000
807GL4297692913382929134468KF90644800000
807GL4297692913382929134468KF90644900000
683GL4297751285226312856982GQ24124840000
623GL42978149978355011033KJ42041430000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.