Alignments HeLa 2x75 A 1 Track Settings
 
HeLa-S3 200 bp paired read RNA-seq Alignments Rep 1 from ENCODE/Caltech

This track is a subtrack of the composite container track "Alignments".
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Display read names
Attempt to join paired end reads by name
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Alignment Gap/Insertion Display Options Help on display options
Draw double horizontal lines when both genome and query have an insertion
Draw a vertical purple line for an insertion at the beginning or end of the
query, orange for insertion in the middle of the query
Draw a vertical green line where query has a polyA tail insertion

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Color by strand (blue for +, red for -)
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Metadata:
Principal Investigator on grant:Myers
Lab producing data:Wold - CalTech
Experiment (Assay) type:RNA-seq
View - Peaks or Signals:Alignments
Cell, tissue or DNA sample:HeLa-S3
Cellular compartment:cell
RNA Extract:Long PolyA+ RNA
Paired/Single reads lengths:2x75
Insertion length:200 base pairs
Replicate number:1
Version of data if resubmitted:V2 - A better mapping technique.
Assembly originally mapped to:hg18
ENCODE Data Freeze:ENCODE Jan 2011 Freeze
UCSC Accession:wgEncodeEH000130
Date submitted to UCSC:2010-01-13
Date resubmitted to UCSC:2011-01-22
Date restrictions end:2010-10-12
Submission ID:3418
Lab provided identifier:10881
Mapping algorithm:TopHat v1.0.14
tableName:wgEncodeCaltechRnaSeqHelas3R2x75Il200AlignsRep1V2
File Name for downloading:wgEncodeCaltechRnaSeqHelas3R2x75Il200AlignsRep1V2.bam,wgEncodeCaltechRnaSeqHelas3R2x75Il200AlignsRep1V2.bam.bai
Data schema/format description and download
Source data version: ENCODE Jan 2011 Freeze
Assembly: Human Feb. 2009 (GRCh37/hg19)
Data last updated at UCSC: 2011-04-26