Alignments HeS3 nuc pA- A 1 Track Settings
 
HeLa-S3 nucleus polyA- RNA-seq Alignments Rep 1 from ENCODE/CSHL

This track is a subtrack of the composite container track "Alignments".
Click here to display the "Alignments" container configuration page.

Display mode:      Duplicate track   

Display read names
Attempt to join paired end reads by name
Minimum alignment quality:

Color track by bases: Help on base coloring

Alignment Gap/Insertion Display Options Help on display options
Draw double horizontal lines when both genome and query have an insertion
Draw a vertical purple line for an insertion at the beginning or end of the
query, orange for insertion in the middle of the query
Draw a vertical green line where query has a polyA tail insertion

Additional coloring modes:
Color by strand (blue for +, red for -)
Use gray for
Use R,G,B colors specified in user-defined tag
No additional coloring

Display data as a density graph:

BAM configuration help

Metadata:
Principal Investigator on grant:Gingeras
Lab producing data:Gingeras - CSHL
Experiment (Assay) type:RNA-seq
View - Peaks or Signals:Alignments
Cell, tissue or DNA sample:HeLa-S3
Cellular compartment:nucleus
RNA Extract:Long PolyA- RNA
Paired/Single reads lengths:2x76D
Replicate number:1
ENCODE Data Freeze:ENCODE Jan 2011 Freeze
UCSC Accession:wgEncodeEH000190
Date submitted to UCSC:2011-01-11
Date restrictions end:2011-10-11
Submission ID:3234
GEO sample accession:GSM767848
Lab provided identifier:LID9200
Cross Lab Bio-Replicate ID:011N
Spike-In Pool:Nist14
Sequencing Platform:Illumina Genome Analyzer IIx
tableName:wgEncodeCshlLongRnaSeqHelas3NucleusLongnonpolyaAlnRep1
File Name for downloading:wgEncodeCshlLongRnaSeqHelas3NucleusLongnonpolyaAlnRep1.bam,wgEncodeCshlLongRnaSeqHelas3NucleusLongnonpolyaAlnRep1.bam.bai
Data schema/format description and download
Source data version: ENCODE Jan 2011 Freeze
Assembly: Human Feb. 2009 (GRCh37/hg19)
Data last updated at UCSC: 2011-01-11