ENCODE CAGE Track Settings
 
ENCODE CAGE samples

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Assembly: Human Feb. 2009 (GRCh37/hg19)

Description

This track represents the 5' end of CAGE tags from 31 different cell lines, providing a visualization of putative TSS at single-base resolution. Additional information on the cell lines can be found on the ENCODE Common Cell Types page at UCSC.

Methods

Raw data was downloaded as BAM files from UCSC. Samples were split into plus and minus reads. WIG files were generated with a fragment length set to 1 bp.

Credits

Data were generated by Djebali et al. (2012) and processed by the EPD team at the Swiss Institute of Bioinformatics (Dreos et al. 2013). For inquiries, please

References

Dreos R, Ambrosini G, Perier RC, Bucher P. EPD and EPDnew, high-quality promoter resources in the next-generation sequencing era. Nucleic Acids Res. 2013 Jan 1;41(D1):D157-64. PMID: 23193273.

Djebali S, Davis CA, Merkel A, Dobin A et al. Landscape of transcription in human cells. Nature. 2012 Sep 6;489(7414):101-8. doi: 10.1038/nature11233. PMID: 22955620