ICGC mutations Track Settings
 
ICGC somatic mutations by tumor type

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 Acute Myel Leuk  ICGC Acute Myeloid Leukemia - KR   Data format 
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 Bladder Urothel  ICGC Bladder Urothelial carcinoma - CN   Data format 
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 Bone Cancer  ICGC Bone Cancer - UK   Data format 
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 Breast TNBC  ICGC Breast Triple Negative/Lobular Cancer - UK   Data format 
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 Chron Lymphocyc  ICGC Chronic Lymphocyclic Leukemia - ES   Data format 
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 Chron Myeloid Dis  ICGC Chronic Myeloid Disorders - UK   Data format 
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 Early Prostate  ICGC Early Onset Prostate Cancer - DE   Data format 
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 Esophageal Adenoc  ICGC Esophageal Adenocarcinoma - UK   Data format 
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 Esophageal Cancer  ICGC Esophageal Cancer - CN   Data format 
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 Gastric  ICGC Gastric Cancer - CN   Data format 
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 Liver FR  ICGC Liver Cancer - FR   Data format 
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 Liver NCC JP  ICGC Liver Cancer - NCC, JP   Data format 
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 Liver RIKEN JP  ICGC Liver Cancer - RIKEN, JP   Data format 
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 Lung Squamous KR  ICGC Lung Cancer - Squamous cell carcinoma - KR   Data format 
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 Malignant Lymph  ICGC Malignant Lymphoma - DE   Data format 
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 Neuroblastoma  ICGC Neuroblastoma - TARGET, US   Data format 
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 Oral  ICGC Oral Cancer - IN   Data format 
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 Ovarian  ICGC Ovarian Cancer - AU   Data format 
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 Pancreas AU  ICGC Pancreatic Cancer - AU   Data format 
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 Pancreas CA  ICGC Pancreatic Cancer - CA   Data format 
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 Pancreatic Endocr  ICGC Pancreatic Cancer Endocrine neoplasms - AU   Data format 
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 Pediatric Brain  ICGC Pediatric Brain Cancer - DE   Data format 
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 Prostate Adeno CA  ICGC Prostate Adenocarcinoma - CA   Data format 
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 Prostate Adeno UK  ICGC Prostate Adenocarcinoma - UK   Data format 
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 Renal Cell  ICGC Renal Cell Cancer - EU/FR   Data format 
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 Renal Clear Cell  ICGC Renal clear cell carcinoma - CN   Data format 
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 Thyroid  ICGC Thyroid Cancer - SA   Data format 
    
Data schema/format description and download
Assembly: Human Feb. 2009 (GRCh37/hg19)

Description

The International Cancer Genome Consortium is a collaboration of cancer sequencing projects from more than 17 countries. ICGC provides a list of somatic tumor mutations for public access. Only a few mutations that might leak germline information are excluded.

We separated the mutations by tumor type. Tracks are annotated with the country if several tumors were sequenced by different projects. You can mouse over tracks to see the complete description of the tumor type and country.

For questions or feedback on the data, please contact ICGC at info@icgc.org.

Methods

ICGC somatic mutations, release 16, in VCF format were downloaded from the ICGC Data Repository, split by project with a custom python script. TCGA projects were removed as we provide them as a separate track. Conversion and formatting by Maximilian Haeussler.

References

Zhang, Junjun, Joachim Baran, A. Cros, Jonathan M. Guberman, Syed Haider, Jack Hsu, Yong Liang et al. "International Cancer Genome Consortium Data Portal - a one-stop shop for cancer genomics data." Database 2011 (2011): bar026.