H3K9me3 Track Settings
 
CEMT:H3K9me3

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 All Assay H3K9me3 
Source
Thyroid 
Large Intestine-Colon-Rectosigmoid:Large Intestine-Colon Adenocarcinoma 
Brain-Temporal lobe-Left:Brain-Temporal lobe-Left Oligodendroglioma 
MCF10A 
Thyroid:Thyroid Papillary Carcinoma 
Large Intestine-Colon-Ascending (Right) 
Large Intestine-Colon-Ascending (Right):Large Intestine-Colon Carcinoma 
Large Intestine-Colon-Rectosigmoid 
Large Intestine-Colon-Ascending (Right):Large Intestine-Colon Adenocarcinoma 
Thyroid:Thyroid Adenoma-Follicular 
Luminal progenitor 
HL60 
B cells:Blood-Peripheral Leukemia-Chronic lymphocytic leukemia 
184-hTert-L2 
Thyroid:Thyroid Goiter 
Brain:Brain Oligodendroglioma-Anaplastic 
Large Intestine-Colon-Ascending (Right):Large Intestine Adenoma 
Brain:Brain Glioblastoma Multiforme 
184-hTert-L9 
B cells:Blood Leukemia-Chronic lymphocytic leukemia 
Large Intestine-Colon 
Basal cells 
Large Intestine-Colon-Rectosigmoid:Large Intestine Diverticulitis 
Brain-Frontal Lobe-Right:Brain Oligodendroglioma-Anaplastic 
Hematopoietic 
Luminal cells-mature 
CD19+ cells (B lymphocytes):Blood-Peripheral Leukemia-Chronic lymphocytic leukemia 
Thyroid:Thyroid Carcinoma - Papillary-Classical 
Stromal cells 
Hematopoietic:Blood Leukemia - Chronic Myeloid 
Brain-Frontal Lobe-Left:Brain-Frontal Lobe-Left Glioblastoma Multiforme-Oligodendroglial component 
Source
 All Assay H3K9me3 
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 Configure 		 HL60  FG015.gDNA  H3K9me3  signal unstranded  CEMT  A23121:FG015.gDNA:HL60:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 184-hTert-L9  CEMT0008.gDNA  H3K9me3  peaks bw  CEMT  A26694:CEMT0008.gDNA:184-hTert-L9:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 184-hTert-L9  CEMT0008.gDNA  H3K9me3  signal unstranded  CEMT  A26694:CEMT0008.gDNA:184-hTert-L9:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 184-hTert-L2  CEMT0009.gDNA  H3K9me3  peaks bw  CEMT  A26701:CEMT0009.gDNA:184-hTert-L2:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 184-hTert-L2  CEMT0009.gDNA  H3K9me3  signal unstranded  CEMT  A26701:CEMT0009.gDNA:184-hTert-L2:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 MCF10A  CEMT0007.gDNA  H3K9me3  peaks bw  CEMT  A28472:CEMT0007.gDNA:MCF10A:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 MCF10A  CEMT0007.gDNA  H3K9me3  signal unstranded  CEMT  A28472:CEMT0007.gDNA:MCF10A:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Brain-Temporal lobe-Left:Brain-Temporal lobe-Left Oligodendroglioma  CEMT0019.gDNA  H3K9me3  peaks bw  CEMT  A33075:CEMT0019.gDNA:Brain-Temporal_lobe-Left:Brain-Temporal_lobe-Left_Oligodendroglioma:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Brain-Temporal lobe-Left:Brain-Temporal lobe-Left Oligodendroglioma  CEMT0019.gDNA  H3K9me3  signal unstranded  CEMT  A33075:CEMT0019.gDNA:Brain-Temporal_lobe-Left:Brain-Temporal_lobe-Left_Oligodendroglioma:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Brain-Frontal Lobe-Left:Brain-Frontal Lobe-Left Glioblastoma Multiforme-Oligodendroglial component  CEMT0021.gDNA  H3K9me3  peaks bw  CEMT  A33469:CEMT0021.gDNA:Brain-Frontal_Lobe-Left:Brain-Frontal_Lobe-Left_Glioblastoma_Multiforme-Oligodendroglial_component:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Brain-Frontal Lobe-Left:Brain-Frontal Lobe-Left Glioblastoma Multiforme-Oligodendroglial component  CEMT0021.gDNA  H3K9me3  signal unstranded  CEMT  A33469:CEMT0021.gDNA:Brain-Frontal_Lobe-Left:Brain-Frontal_Lobe-Left_Glioblastoma_Multiforme-Oligodendroglial_component:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Brain:Brain Oligodendroglioma-Anaplastic  CEMT0022.gDNA  H3K9me3  peaks bw  CEMT  A33476:CEMT0022.gDNA:Brain:Brain_Oligodendroglioma-Anaplastic:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Brain:Brain Oligodendroglioma-Anaplastic  CEMT0022.gDNA  H3K9me3  signal unstranded  CEMT  A33476:CEMT0022.gDNA:Brain:Brain_Oligodendroglioma-Anaplastic:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Brain:Brain Glioblastoma Multiforme  CEMT0023.gDNA  H3K9me3  peaks bw  CEMT  A33483:CEMT0023.gDNA:Brain:Brain_Glioblastoma_Multiforme:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Brain:Brain Glioblastoma Multiforme  CEMT0023.gDNA  H3K9me3  signal unstranded  CEMT  A33483:CEMT0023.gDNA:Brain:Brain_Glioblastoma_Multiforme:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 B cells:Blood-Peripheral Leukemia-Chronic lymphocytic leukemia  CEMT0004.gDNA  H3K9me3  peaks bw  CEMT  A34021:CEMT0004.gDNA:B_cells:Blood-Peripheral_Leukemia-Chronic_lymphocytic_leukemia:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 B cells:Blood-Peripheral Leukemia-Chronic lymphocytic leukemia  CEMT0004.gDNA  H3K9me3  signal unstranded  CEMT  A34021:CEMT0004.gDNA:B_cells:Blood-Peripheral_Leukemia-Chronic_lymphocytic_leukemia:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 B cells:Blood-Peripheral Leukemia-Chronic lymphocytic leukemia  CEMT0005.gDNA  H3K9me3  peaks bw  CEMT  A34037:CEMT0005.gDNA:B_cells:Blood-Peripheral_Leukemia-Chronic_lymphocytic_leukemia:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 B cells:Blood-Peripheral Leukemia-Chronic lymphocytic leukemia  CEMT0005.gDNA  H3K9me3  signal unstranded  CEMT  A34037:CEMT0005.gDNA:B_cells:Blood-Peripheral_Leukemia-Chronic_lymphocytic_leukemia:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 B cells:Blood-Peripheral Leukemia-Chronic lymphocytic leukemia  CEMT0006.gDNA  H3K9me3  peaks bw  CEMT  A34076:CEMT0006.gDNA:B_cells:Blood-Peripheral_Leukemia-Chronic_lymphocytic_leukemia:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 B cells:Blood-Peripheral Leukemia-Chronic lymphocytic leukemia  CEMT0006.gDNA  H3K9me3  signal unstranded  CEMT  A34076:CEMT0006.gDNA:B_cells:Blood-Peripheral_Leukemia-Chronic_lymphocytic_leukemia:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Thyroid  CEMT0040.gDNA  H3K9me3  peaks bw  CEMT  A34083:CEMT0040.gDNA:Thyroid:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Thyroid  CEMT0040.gDNA  H3K9me3  signal unstranded  CEMT  A34083:CEMT0040.gDNA:Thyroid:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Thyroid:Thyroid Adenoma-Follicular  CEMT0041.gDNA  H3K9me3  peaks bw  CEMT  A34090:CEMT0041.gDNA:Thyroid:Thyroid_Adenoma-Follicular:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Thyroid:Thyroid Adenoma-Follicular  CEMT0041.gDNA  H3K9me3  signal unstranded  CEMT  A34090:CEMT0041.gDNA:Thyroid:Thyroid_Adenoma-Follicular:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Thyroid  CEMT0042.gDNA  H3K9me3  peaks bw  CEMT  A34382:CEMT0042.gDNA:Thyroid:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Thyroid  CEMT0042.gDNA  H3K9me3  signal unstranded  CEMT  A34382:CEMT0042.gDNA:Thyroid:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Thyroid:Thyroid Adenoma-Follicular  CEMT0043.gDNA  H3K9me3  peaks bw  CEMT  A34389:CEMT0043.gDNA:Thyroid:Thyroid_Adenoma-Follicular:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Thyroid:Thyroid Adenoma-Follicular  CEMT0043.gDNA  H3K9me3  signal unstranded  CEMT  A34389:CEMT0043.gDNA:Thyroid:Thyroid_Adenoma-Follicular:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Thyroid  CEMT0044.gDNA  H3K9me3  peaks bw  CEMT  A34708:CEMT0044.gDNA:Thyroid:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Thyroid  CEMT0044.gDNA  H3K9me3  signal unstranded  CEMT  A34708:CEMT0044.gDNA:Thyroid:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Thyroid:Thyroid Goiter  CEMT0045.gDNA  H3K9me3  peaks bw  CEMT  A34715:CEMT0045.gDNA:Thyroid:Thyroid_Goiter:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Thyroid:Thyroid Goiter  CEMT0045.gDNA  H3K9me3  signal unstranded  CEMT  A34715:CEMT0045.gDNA:Thyroid:Thyroid_Goiter:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Hematopoietic  CEMT0032.gDNA  H3K9me3  peaks bw  CEMT  A34722:CEMT0032.gDNA:Hematopoietic:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Hematopoietic  CEMT0032.gDNA  H3K9me3  signal unstranded  CEMT  A34722:CEMT0032.gDNA:Hematopoietic:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 CD19+ cells (B lymphocytes):Blood-Peripheral Leukemia-Chronic lymphocytic leukemia  CEMT0026.gDNA  H3K9me3  peaks bw  CEMT  A34940:CEMT0026.gDNA:CD19+_cells_(B_lymphocytes):Blood-Peripheral_Leukemia-Chronic_lymphocytic_leukemia:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 CD19+ cells (B lymphocytes):Blood-Peripheral Leukemia-Chronic lymphocytic leukemia  CEMT0026.gDNA  H3K9me3  signal unstranded  CEMT  A34940:CEMT0026.gDNA:CD19+_cells_(B_lymphocytes):Blood-Peripheral_Leukemia-Chronic_lymphocytic_leukemia:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 CD19+ cells (B lymphocytes):Blood-Peripheral Leukemia-Chronic lymphocytic leukemia  CEMT0027.gDNA  H3K9me3  peaks bw  CEMT  A34947:CEMT0027.gDNA:CD19+_cells_(B_lymphocytes):Blood-Peripheral_Leukemia-Chronic_lymphocytic_leukemia:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 CD19+ cells (B lymphocytes):Blood-Peripheral Leukemia-Chronic lymphocytic leukemia  CEMT0027.gDNA  H3K9me3  signal unstranded  CEMT  A34947:CEMT0027.gDNA:CD19+_cells_(B_lymphocytes):Blood-Peripheral_Leukemia-Chronic_lymphocytic_leukemia:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 CD19+ cells (B lymphocytes):Blood-Peripheral Leukemia-Chronic lymphocytic leukemia  CEMT0028.gDNA  H3K9me3  peaks bw  CEMT  A34954:CEMT0028.gDNA:CD19+_cells_(B_lymphocytes):Blood-Peripheral_Leukemia-Chronic_lymphocytic_leukemia:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 CD19+ cells (B lymphocytes):Blood-Peripheral Leukemia-Chronic lymphocytic leukemia  CEMT0028.gDNA  H3K9me3  signal unstranded  CEMT  A34954:CEMT0028.gDNA:CD19+_cells_(B_lymphocytes):Blood-Peripheral_Leukemia-Chronic_lymphocytic_leukemia:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 CD19+ cells (B lymphocytes):Blood-Peripheral Leukemia-Chronic lymphocytic leukemia  CEMT0029.gDNA  H3K9me3  peaks bw  CEMT  A34961:CEMT0029.gDNA:CD19+_cells_(B_lymphocytes):Blood-Peripheral_Leukemia-Chronic_lymphocytic_leukemia:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 CD19+ cells (B lymphocytes):Blood-Peripheral Leukemia-Chronic lymphocytic leukemia  CEMT0029.gDNA  H3K9me3  signal unstranded  CEMT  A34961:CEMT0029.gDNA:CD19+_cells_(B_lymphocytes):Blood-Peripheral_Leukemia-Chronic_lymphocytic_leukemia:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 CD19+ cells (B lymphocytes):Blood-Peripheral Leukemia-Chronic lymphocytic leukemia  CEMT0025.gDNA  H3K9me3  peaks bw  CEMT  A35238:CEMT0025.gDNA:CD19+_cells_(B_lymphocytes):Blood-Peripheral_Leukemia-Chronic_lymphocytic_leukemia:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 CD19+ cells (B lymphocytes):Blood-Peripheral Leukemia-Chronic lymphocytic leukemia  CEMT0025.gDNA  H3K9me3  signal unstranded  CEMT  A35238:CEMT0025.gDNA:CD19+_cells_(B_lymphocytes):Blood-Peripheral_Leukemia-Chronic_lymphocytic_leukemia:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 CD19+ cells (B lymphocytes):Blood-Peripheral Leukemia-Chronic lymphocytic leukemia  CEMT0030.gDNA  H3K9me3  peaks bw  CEMT  A35245:CEMT0030.gDNA:CD19+_cells_(B_lymphocytes):Blood-Peripheral_Leukemia-Chronic_lymphocytic_leukemia:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 CD19+ cells (B lymphocytes):Blood-Peripheral Leukemia-Chronic lymphocytic leukemia  CEMT0030.gDNA  H3K9me3  signal unstranded  CEMT  A35245:CEMT0030.gDNA:CD19+_cells_(B_lymphocytes):Blood-Peripheral_Leukemia-Chronic_lymphocytic_leukemia:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Basal cells  CEMT0035.gDNA  H3K9me3  peaks bw  CEMT  A35252:CEMT0035.gDNA:Basal_cells:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Basal cells  CEMT0035.gDNA  H3K9me3  signal unstranded  CEMT  A35252:CEMT0035.gDNA:Basal_cells:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Stromal cells  CEMT0036.gDNA  H3K9me3  peaks bw  CEMT  A35259:CEMT0036.gDNA:Stromal_cells:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Stromal cells  CEMT0036.gDNA  H3K9me3  signal unstranded  CEMT  A35259:CEMT0036.gDNA:Stromal_cells:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Luminal cells-mature  CEMT0037.gDNA  H3K9me3  peaks bw  CEMT  A35266:CEMT0037.gDNA:Luminal_cells-mature:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Luminal cells-mature  CEMT0037.gDNA  H3K9me3  signal unstranded  CEMT  A35266:CEMT0037.gDNA:Luminal_cells-mature:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Luminal progenitor  CEMT0038.gDNA  H3K9me3  peaks bw  CEMT  A35273:CEMT0038.gDNA:Luminal_progenitor:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Luminal progenitor  CEMT0038.gDNA  H3K9me3  signal unstranded  CEMT  A35273:CEMT0038.gDNA:Luminal_progenitor:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Hematopoietic:Blood Leukemia - Chronic Myeloid  CEMT0031.gDNA  H3K9me3  peaks bw  CEMT  A35993:CEMT0031.gDNA:Hematopoietic:Blood_Leukemia_-_Chronic_Myeloid:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Hematopoietic:Blood Leukemia - Chronic Myeloid  CEMT0031.gDNA  H3K9me3  signal unstranded  CEMT  A35993:CEMT0031.gDNA:Hematopoietic:Blood_Leukemia_-_Chronic_Myeloid:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Brain-Frontal Lobe-Right:Brain Oligodendroglioma-Anaplastic  CEMT0047.gDNA  H3K9me3  peaks bw  CEMT  A37108:CEMT0047.gDNA:Brain-Frontal_Lobe-Right:Brain_Oligodendroglioma-Anaplastic:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Brain-Frontal Lobe-Right:Brain Oligodendroglioma-Anaplastic  CEMT0047.gDNA  H3K9me3  signal unstranded  CEMT  A37108:CEMT0047.gDNA:Brain-Frontal_Lobe-Right:Brain_Oligodendroglioma-Anaplastic:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon-Ascending (Right)  CEMT0033.gDNA  H3K9me3  peaks bw  CEMT  A47307:CEMT0033.gDNA:Large_Intestine-Colon-Ascending_(Right):H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon-Ascending (Right)  CEMT0033.gDNA  H3K9me3  signal unstranded  CEMT  A47307:CEMT0033.gDNA:Large_Intestine-Colon-Ascending_(Right):H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon-Ascending (Right)  CEMT0034.gDNA  H3K9me3  peaks bw  CEMT  A47314:CEMT0034.gDNA:Large_Intestine-Colon-Ascending_(Right):H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon-Ascending (Right)  CEMT0034.gDNA  H3K9me3  signal unstranded  CEMT  A47314:CEMT0034.gDNA:Large_Intestine-Colon-Ascending_(Right):H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon-Rectosigmoid  CEMT0050.gDNA  H3K9me3  peaks bw  CEMT  A50436:CEMT0050.gDNA:Large_Intestine-Colon-Rectosigmoid:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon-Rectosigmoid  CEMT0050.gDNA  H3K9me3  signal unstranded  CEMT  A50436:CEMT0050.gDNA:Large_Intestine-Colon-Rectosigmoid:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon-Rectosigmoid  CEMT0051.gDNA  H3K9me3  peaks bw  CEMT  A50443:CEMT0051.gDNA:Large_Intestine-Colon-Rectosigmoid:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon-Rectosigmoid  CEMT0051.gDNA  H3K9me3  signal unstranded  CEMT  A50443:CEMT0051.gDNA:Large_Intestine-Colon-Rectosigmoid:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon-Ascending (Right)  CEMT0052.gDNA  H3K9me3  peaks bw  CEMT  A50450:CEMT0052.gDNA:Large_Intestine-Colon-Ascending_(Right):H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon-Ascending (Right)  CEMT0052.gDNA  H3K9me3  signal unstranded  CEMT  A50450:CEMT0052.gDNA:Large_Intestine-Colon-Ascending_(Right):H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon  CEMT0053.gDNA  H3K9me3  peaks bw  CEMT  A50457:CEMT0053.gDNA:Large_Intestine-Colon:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon  CEMT0053.gDNA  H3K9me3  signal unstranded  CEMT  A50457:CEMT0053.gDNA:Large_Intestine-Colon:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon  CEMT0054.gDNA  H3K9me3  peaks bw  CEMT  A50464:CEMT0054.gDNA:Large_Intestine-Colon:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon  CEMT0054.gDNA  H3K9me3  signal unstranded  CEMT  A50464:CEMT0054.gDNA:Large_Intestine-Colon:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon  CEMT0055.gDNA  H3K9me3  peaks bw  CEMT  A50471:CEMT0055.gDNA:Large_Intestine-Colon:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon  CEMT0055.gDNA  H3K9me3  signal unstranded  CEMT  A50471:CEMT0055.gDNA:Large_Intestine-Colon:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon  CEMT0056.gDNA  H3K9me3  peaks bw  CEMT  A50478:CEMT0056.gDNA:Large_Intestine-Colon:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon  CEMT0056.gDNA  H3K9me3  signal unstranded  CEMT  A50478:CEMT0056.gDNA:Large_Intestine-Colon:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon  CEMT0057.gDNA  H3K9me3  peaks bw  CEMT  A50485:CEMT0057.gDNA:Large_Intestine-Colon:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon  CEMT0057.gDNA  H3K9me3  signal unstranded  CEMT  A50485:CEMT0057.gDNA:Large_Intestine-Colon:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon-Rectosigmoid  CEMT0058.gDNA  H3K9me3  peaks bw  CEMT  A50614:CEMT0058.gDNA:Large_Intestine-Colon-Rectosigmoid:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon-Rectosigmoid  CEMT0058.gDNA  H3K9me3  signal unstranded  CEMT  A50614:CEMT0058.gDNA:Large_Intestine-Colon-Rectosigmoid:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon-Rectosigmoid  CEMT0059.gDNA  H3K9me3  peaks bw  CEMT  A50621:CEMT0059.gDNA:Large_Intestine-Colon-Rectosigmoid:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon-Rectosigmoid  CEMT0059.gDNA  H3K9me3  signal unstranded  CEMT  A50621:CEMT0059.gDNA:Large_Intestine-Colon-Rectosigmoid:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon  CEMT0060.gDNA  H3K9me3  peaks bw  CEMT  A50873:CEMT0060.gDNA:Large_Intestine-Colon:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon  CEMT0060.gDNA  H3K9me3  signal unstranded  CEMT  A50873:CEMT0060.gDNA:Large_Intestine-Colon:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon  CEMT0061.gDNA  H3K9me3  peaks bw  CEMT  A50880:CEMT0061.gDNA:Large_Intestine-Colon:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon  CEMT0061.gDNA  H3K9me3  signal unstranded  CEMT  A50880:CEMT0061.gDNA:Large_Intestine-Colon:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon-Ascending (Right):Large Intestine-Colon Adenocarcinoma  CEMT0063.gDNA  H3K9me3  peaks bw  CEMT  A50887:CEMT0063.gDNA:Large_Intestine-Colon-Ascending_(Right):Large_Intestine-Colon_Adenocarcinoma:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon-Ascending (Right):Large Intestine-Colon Adenocarcinoma  CEMT0063.gDNA  H3K9me3  signal unstranded  CEMT  A50887:CEMT0063.gDNA:Large_Intestine-Colon-Ascending_(Right):Large_Intestine-Colon_Adenocarcinoma:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon-Ascending (Right):Large Intestine-Colon Adenocarcinoma  CEMT0064.gDNA  H3K9me3  peaks bw  CEMT  A50894:CEMT0064.gDNA:Large_Intestine-Colon-Ascending_(Right):Large_Intestine-Colon_Adenocarcinoma:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon-Ascending (Right):Large Intestine-Colon Adenocarcinoma  CEMT0064.gDNA  H3K9me3  signal unstranded  CEMT  A50894:CEMT0064.gDNA:Large_Intestine-Colon-Ascending_(Right):Large_Intestine-Colon_Adenocarcinoma:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon-Ascending (Right):Large Intestine-Colon Carcinoma  CEMT0065.gDNA  H3K9me3  peaks bw  CEMT  A51316:CEMT0065.gDNA:Large_Intestine-Colon-Ascending_(Right):Large_Intestine-Colon_Carcinoma:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon-Ascending (Right):Large Intestine-Colon Carcinoma  CEMT0065.gDNA  H3K9me3  signal unstranded  CEMT  A51316:CEMT0065.gDNA:Large_Intestine-Colon-Ascending_(Right):Large_Intestine-Colon_Carcinoma:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon-Rectosigmoid:Large Intestine-Colon Adenocarcinoma  CEMT0066.gDNA  H3K9me3  peaks bw  CEMT  A51323:CEMT0066.gDNA:Large_Intestine-Colon-Rectosigmoid:Large_Intestine-Colon_Adenocarcinoma:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon-Rectosigmoid:Large Intestine-Colon Adenocarcinoma  CEMT0066.gDNA  H3K9me3  signal unstranded  CEMT  A51323:CEMT0066.gDNA:Large_Intestine-Colon-Rectosigmoid:Large_Intestine-Colon_Adenocarcinoma:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon-Ascending (Right):Large Intestine-Colon Adenocarcinoma  CEMT0067.gDNA  H3K9me3  peaks bw  CEMT  A51330:CEMT0067.gDNA:Large_Intestine-Colon-Ascending_(Right):Large_Intestine-Colon_Adenocarcinoma:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon-Ascending (Right):Large Intestine-Colon Adenocarcinoma  CEMT0067.gDNA  H3K9me3  signal unstranded  CEMT  A51330:CEMT0067.gDNA:Large_Intestine-Colon-Ascending_(Right):Large_Intestine-Colon_Adenocarcinoma:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon-Ascending (Right):Large Intestine Adenoma  CEMT0062.gDNA  H3K9me3  peaks bw  CEMT  A52087:CEMT0062.gDNA:Large_Intestine-Colon-Ascending_(Right):Large_Intestine_Adenoma:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon-Ascending (Right):Large Intestine Adenoma  CEMT0062.gDNA  H3K9me3  signal unstranded  CEMT  A52087:CEMT0062.gDNA:Large_Intestine-Colon-Ascending_(Right):Large_Intestine_Adenoma:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon-Rectosigmoid:Large Intestine Diverticulitis  CEMT0068.gDNA  H3K9me3  peaks bw  CEMT  A55592:CEMT0068.gDNA:Large_Intestine-Colon-Rectosigmoid:Large_Intestine_Diverticulitis:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon-Rectosigmoid:Large Intestine Diverticulitis  CEMT0068.gDNA  H3K9me3  signal unstranded  CEMT  A55592:CEMT0068.gDNA:Large_Intestine-Colon-Rectosigmoid:Large_Intestine_Diverticulitis:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon-Rectosigmoid  CEMT0072.gDNA  H3K9me3  peaks bw  CEMT  A55599:CEMT0072.gDNA:Large_Intestine-Colon-Rectosigmoid:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Large Intestine-Colon-Rectosigmoid  CEMT0072.gDNA  H3K9me3  signal unstranded  CEMT  A55599:CEMT0072.gDNA:Large_Intestine-Colon-Rectosigmoid:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Thyroid  CEMT0086.gDNA  H3K9me3  peaks bw  CEMT  A56245:CEMT0086.gDNA:Thyroid:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Thyroid  CEMT0086.gDNA  H3K9me3  signal unstranded  CEMT  A56245:CEMT0086.gDNA:Thyroid:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Thyroid:Thyroid Carcinoma - Papillary-Classical  CEMT0087.gDNA  H3K9me3  peaks bw  CEMT  A56252:CEMT0087.gDNA:Thyroid:Thyroid_Carcinoma_-_Papillary-Classical:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Thyroid:Thyroid Carcinoma - Papillary-Classical  CEMT0087.gDNA  H3K9me3  signal unstranded  CEMT  A56252:CEMT0087.gDNA:Thyroid:Thyroid_Carcinoma_-_Papillary-Classical:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 B cells:Blood Leukemia-Chronic lymphocytic leukemia  CEMT0095.gDNA  H3K9me3  peaks bw  CEMT  A60652:CEMT0095.gDNA:B_cells:Blood_Leukemia-Chronic_lymphocytic_leukemia:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 B cells:Blood Leukemia-Chronic lymphocytic leukemia  CEMT0095.gDNA  H3K9me3  signal unstranded  CEMT  A60652:CEMT0095.gDNA:B_cells:Blood_Leukemia-Chronic_lymphocytic_leukemia:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Thyroid  CEMT0088.gDNA  H3K9me3  peaks bw  CEMT  A66370:CEMT0088.gDNA:Thyroid:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Thyroid  CEMT0088.gDNA  H3K9me3  signal unstranded  CEMT  A66370:CEMT0088.gDNA:Thyroid:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Thyroid  CEMT0090.gDNA  H3K9me3  peaks bw  CEMT  A66384:CEMT0090.gDNA:Thyroid:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Thyroid  CEMT0090.gDNA  H3K9me3  signal unstranded  CEMT  A66384:CEMT0090.gDNA:Thyroid:H3K9me3:sig_u:CEMT    Data format 
 
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 Configure 		 Thyroid:Thyroid Papillary Carcinoma  CEMT0091.gDNA  H3K9me3  peaks bw  CEMT  A66391:CEMT0091.gDNA:Thyroid:Thyroid_Papillary_Carcinoma:H3K9me3:peak:CEMT    Data format 
 
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 Configure 		 Thyroid:Thyroid Papillary Carcinoma  CEMT0091.gDNA  H3K9me3  signal unstranded  CEMT  A66391:CEMT0091.gDNA:Thyroid:Thyroid_Papillary_Carcinoma:H3K9me3:sig_u:CEMT    Data format 
    
Assembly: Human Feb. 2009 (GRCh37/hg19)
www.epigenomes.ca tracks

Description

The tracks available in this set have been generated by the Centre for Epigenome Mapping Technology (CEMT) at Canada's Michael Smith Genome Sciences Centre (BCGSC) as a part of the contribution of Canadian Epigenetics, Environment and Health Research Consortium (CEEHRC) to the International Human Epigenome Consortium (IHEC).

The data tracks represent raw signal generated from aligned reads. Access to the raw data underlying the tracks is controlled via European Bioinformatics Institute. The data will be submitted to CEMT Reference Epigenomes (Study: EGAS00001000552) as it becomes available. More information about the project is available at www.epigenomes.ca.

Sample metadata is available at: CEMT Samples.

Methods

The wet lab protocols used are described in protocols.

The protocol for ChIP-Seq assays was paired end. The raw reads from the sequencing were first split by index and adaptors were trimmed, then fastq files corresponding to the two mate pairs were generated for each index. The reads were aligned to GRCh37-lite reference using Burrows-Wheeler Aligner version 0.5.7 and converted to bam format with SAMtools (version 0.1.13). The bams were annotated using in-house tools (including flagging of chastity failed reads) and the duplicates were marked using Picard Tools' MarkDuplicates.jar (version 1.71).

Compressed wig tracks were generated from bam through in-house tools using ChIP-Seq mode with SAMtools flags "-F 1028 -q 5" and GRCh37-lite chromosome names changed to UCSC chromosome names. The wig files were converted to bigwigs using UCSC tools.

The command lines used were:

commands
$BWA_PATH/bwa aln -t 16 GRCh37-lite.fa $MATE_1_FASTQ > $MATE_1_SAI
$BWA_PATH/bwa aln -t 16 GRCh37-lite.fa $MATE_2_FASTQ > $MATE_2_SAI
bwa sampe GRCh37-lite.fa $MATE_1_SAI $MATE_2_SAI $MATE_1_FASTQ $MATE_2_FASTQ | samtools view -bt GRCh37-lite.fa.fai - | samtools sort - $SORTED_PREFIX
java -Xms512m -Xmx16g -jar MarkDuplicates.jar I=$ANNOTATED_SORTED_BAM OUTPUT=$DUPLICATES_MARKED METRICS_FILE=$METRICS_FILE ASSUME_SORTED=true READ_NAME_REGEX="[a-zA-Z0-9]+_[0-9]+:[0-9]+:([0-9]+):([0-9]+):([0-9]+).*" OPTICAL_DUPLICATE_PIXEL_DISTANCE=14 VALIDATION_STRINGENCY=LENIENT
export BAM2WIG_OPTS="-F 1028 -q 5 -cp -n $OUTPUT_PREFIX -chr $CHR_BWA2UCSC_NAMES"
java -jar -Xmx10G $BAM2WIG_PATH/BAM2WIG.jar -bamFile $INFILE $BAM2WIG_OPTS -out $OUTPUT_DIRECTORY;
$UCSCTOOLS/wigToBigWig -clip $INFILE $CHROMSIZES/hg19.chrom.sizes $OUTPUT_DIRECTORY/$OUTFILE

Display Scheme

The various assays have been color coded as follows:

MarkColour
ChIP Input  
H3K27ac  
H3K27me3 
H3K36me3 
H3K4me1  
H3K4me3  
H3K9me3  

Where possible information about the tracks and data is included in the title. However, due to constraints on the length of these fields, this is sometimes not possible. The library information for each track is still included as the first field in the colon delimited title string. Please refer to the metadata table included on this page to look up further details by the library.

Note

When analyzing data from different sources, please note that underlying data processing and handling procedures may be different.

Contacts

Please direct any questions to: edcc@bcgsc.ca