RNASEQ_Stranded Tracks
 
Stranded RNASEQ Cotney Heart hub organized by Sample tracks

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CS12_14131  CS12_14131 RNASEQ tracks from Heart Data  
CS13_14401  CS13_14401 RNASEQ tracks from Heart Data  
CS13_14479  CS13_14479 RNASEQ tracks from Heart Data  
CS16_12997  CS16_12997 RNASEQ tracks from Heart Data  
CS16_14209  CS16_14209 RNASEQ tracks from Heart Data  
CS16_14213  CS16_14213 RNASEQ tracks from Heart Data  
CS17_12291  CS17_12291 RNASEQ tracks from Heart Data  
CS17_12331  CS17_12331 RNASEQ tracks from Heart Data  
CS17_12752  CS17_12752 RNASEQ tracks from Heart Data  
CS18_12059  CS18_12059 RNASEQ tracks from Heart Data  
CS18_12456  CS18_12456 RNASEQ tracks from Heart Data  
CS18_13474  CS18_13474 RNASEQ tracks from Heart Data  
CS19_11914  CS19_11914 RNASEQ tracks from Heart Data  
CS19_12135  CS19_12135 RNASEQ tracks from Heart Data  
CS19_12248  CS19_12248 RNASEQ tracks from Heart Data  
CS20_12448  CS20_12448 RNASEQ tracks from Heart Data  
CS20_12451  CS20_12451 RNASEQ tracks from Heart Data  
CS20_13068  CS20_13068 RNASEQ tracks from Heart Data  
CS21_11849  CS21_11849 RNASEQ tracks from Heart Data  
CS21_12093  CS21_12093 RNASEQ tracks from Heart Data  
CS21_12210  CS21_12210 RNASEQ tracks from Heart Data  
CS23_12058  CS23_12058 RNASEQ tracks from Heart Data  
CS23_12151  CS23_12151 RNASEQ tracks from Heart Data  
CS23_12193  CS23_12193 RNASEQ tracks from Heart Data  
Assembly: Human Feb. 2009 (GRCh37/hg19)

Jennifer VanOudenhove at UCONN HEALTH built this track, and the Cotney Lab is responsible for its contents.

Methods Description

Human embryonic heart tissue was collected, staged and provided by the Joint MRC/Wellcome Trust Human Developmental Biology Resource. Each embryon is identified by stage_ID. Tissues were flash frozen upon collection and stored at -80C. RNA was extracted using miRNeasy RNA extraction kit with on-column DNAse treatment according to the manufacturer’s protocol (Qiagen). RNA integrity was checked using Agilent Tapestation 2200. RNA-seq libraries were prepared from 100-200ng total RNA using the TruSeq stranded mRNA kit (Illumina).

RNA-Seq Data Analysis

RNA-seq libraries were sequenced using the NextSeq (Illumina). Fastq files were demultiplexed by barcode yielding Fastq files for each tissue replicate. Trimmed reads were aligned using tophat2. Stranded bigWigs were generated and aligned to hg19.

Display conventions

Strand Color Legend

  • Forward Strand -  Forward Strand 
  • Reverse Strand -  Reverse Strand 

Contacts

Please email Jennifer VanOudenhove or Justin Cotney for questions.