Cufflinks Transcripts

This track contains all of the raw Cufflinks assembled transcripts for each RNA-Seq library generated for the Broad Institute/Uppsala University Improved Canine Annotation project.

Display Conventions and Configuration

Tracks are both tissue and library type specific. 2 library types were generated ( poly-A selected and DSN normalized) across multiple tissue types

Methods

The transcripts were assembled via the Cufflinks RNA-Seq assembly software. See Hoeppner et. al. 1 for more detailed methods.

Credits

RNA-Seq data was generated at the Broad Institute. Cufflinks assemblies were generated Drs. Manfred Grabherr & Marc Hoeppner at Uppsala University along with Jason Turner-Maier and Jeremy Johnson at the Broad Institute. Dr. Kerstin Lindblad-Toh of the Broad Institute and the SciLifeLab of Uppsala University provided scientific management for the project.

References

Hoeppner et. al., An improved canine genome and a comprehensive catalogue of coding genes and non-coding transcripts. PLoS ONE 9(3): e91172. doi: 10.1371/journal.pone.0091172.

Contact

For questions or more information on the data in this Track Hub, please contact the Broad Institute Vertebrate Genome Biology group: vertebrategenomes@broadinstitute.org