Assembly: Human Feb. 2009 (GRCh37/hg19) Data last updated at UCSC: 2019-08-12 04:38:16
Description
These tracks represent 5′ end of CAGE reads from all FANTOM5 samples merged. Note than only the 5′-end coordinate of each read was retained, facilitating the visual
identification of the putative TSS. An overview of all the tracks
provided by EPD for the hg19 assembly can be seen in table
format here.
Methods
Raw data in BAM format was downloaded from FANTOM5 ftp.
BAM files were converted to BED using bamToBed v2.12.0 (bedtools). SGA conversion was carried out using bed2sga (ChIP-Seq v. 1.5.3).
The WIG files were generated with a step parameter set to 1.
Credits
Data was generated by the FANTOM Consortium and the RIKEN PMI and
CLST (DGT) et al. (2014) and processed by the
EPD team at the Swiss Institute of Bioinformatics
(Dreos et al. 2013). For inquiries, please
References
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