Jeong_Mouse_2013
We are planning to introduce the new version of methylone track hubs sometime between February 7 and February 14 2024. The following assemblies will be updated: mm39, gorGor6, canFam6, GCF_000001735.3, rn7, panTro6, hg38.
Description
Sample |
|
|
BS rate* |
Methylation |
Coverage |
%CpGs |
#HMR |
#AMR |
#PMD |
|
Mouse_HSC-WT |
|
|
0.000 |
0.782 |
12.090 |
0.975 |
45345 |
0 |
0 |
Download |
Mouse_HSC-Dnmt3a-KO |
|
|
0.000 |
0.675 |
29.249 |
0.998 |
53299 |
0 |
0 |
Download |
* see Methods section for how the bisulfite conversion rate is calculated
Terms of use: If you use this resource, please cite us! The Smith Lab at USC has developed and is owner of all analyses and associated browser tracks from the MethBase database (e.g. tracks displayed in the "DNA Methylation" trackhub on the UCSC Genome Browser). Any derivative work or use of the MethBase resource that appears in published literature must cite the most recent publication associated with Methbase (see "References" below). Users who wish to copy the contents of MethBase in bulk into a publicly available resource must additionally have explicit permission from the Smith Lab to do so. We hope the MethBase resource can help you!
Display Conventions and Configuration
The various types of tracks associated with a methylome follow the
display conventions below.
Green intervals represent partially methylated region; Blue intervals
represent hypo-methylated regions; Yellow bars represent methylation
levels; Black bars represent depth of coverage; Purple intervals
represent allele-specific methylated regions; Purple bars represent
allele-specific methylation score; and red intervals represent
hyper-methylated regions.
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