Multiz Alignments of 100 Vertebrates
 

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Alignment block 1 of 641 in window, 56694976 - 56695099, 124 bps 
B D                     Human  aaagtgctgggattacgggcgtgagccactgcgccctgctgtgcccggctaatttttgtatttttagtag
B D                     Chimp  aaagtgctgggattacaggcgtgagccaccgcgccctgctgtgcccggctaatttttgtatttttagtag
B D                   Gorilla  aaagtgctgggattacaggcataagccaccgcgccctgctgtgcccggctaatttttgtatttttagtag
B D                 Orangutan  aaagtgctgggattacaggcatgagccactgcaccctgctgtgcccggctaatttttgtatttttagtag
B D                    Rhesus  aaagtgctgggattacaggcatgagccaacgcgccctgctgtgcccagcaaatttttgtatttttagtgg
B D       Crab-eating macaque  aaagtgctgggattacaggcatgagccaccgcgccctgctgtgcccagcaaatttttgtatttttagtgg
B D              Green monkey  gaagtgctgggattacaggcatgagccaccacgccctgctgtgcccagcaaatttttgtatttttagtgg
B D                  Hedgehog  ======================================================================
B D                Guinea pig  ======================================================================
B D                      Pika  ======================================================================
B D                    Rabbit  ======================================================================
B D                Coelacanth  ======================================================================
B D                     Shrew  ======================================================================
              Golden hamster  ======================================================================
B D                    Baboon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
            Brush-tailed rat  ======================================================================
B D              Atlantic cod  ======================================================================
B D                    Gibbon  ======================================================================
                 Spotted gar  ======================================================================
B D               Stickleback  ======================================================================
          Southern platyfish  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                      Fugu  ======================================================================
B D                 Tetraodon  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
B D                    Medaka  ======================================================================
         Pundamilia nyererei  ======================================================================
                 Zebra mbuna  ======================================================================
       Burton's mouthbreeder  ======================================================================
         Princess of Burundi  ======================================================================
B D              Nile tilapia  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D        American alligator  ======================================================================
  D             Scarlet macaw  ======================================================================
B D                   Opossum  ======================================================================
                  Chinchilla  ======================================================================
B D            Naked mole-rat  ======================================================================
      Lesser Egyptian jerboa  ======================================================================
  D               Rock pigeon  ======================================================================
  D       Collared flycatcher  ======================================================================
B D       Medium ground finch  ======================================================================
B D                    Lizard  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
            Cape golden mole  ======================================================================
          Chinese tree shrew  ======================================================================
         Cape elephant shrew  ======================================================================
B D                  Platypus  ======================================================================
B D                   Manatee  ======================================================================
B D           Chinese hamster  ======================================================================
                Prairie vole  ======================================================================
                    Aardvark  ======================================================================
B D                  Elephant  ======================================================================
B D                    Tenrec  ======================================================================
B D                       Cat  ======================================================================
B D                   Megabat  ======================================================================
B D                  Bushbaby  ======================================================================
B D                       Pig  ======================================================================
  D  Chinese softshell turtle  ======================================================================
B D                   Ferret   ======================================================================
B D                   Dolphin  ======================================================================
B D                       Rat  ======================================================================
B D                     Mouse  ======================================================================
B D                     Panda  ======================================================================
               Domestic goat  ======================================================================
B D                     Sheep  ======================================================================
            Tibetan antelope  ======================================================================
             Star-nosed mole  ======================================================================
              Bactrian camel  ======================================================================
B D                    Alpaca  ======================================================================
              Pacific walrus  ======================================================================
            Black flying-fox  ======================================================================
B D          White rhinoceros  ======================================================================
B D                     Horse  ======================================================================
B D                  Squirrel  ======================================================================
B D                 Armadillo  ======================================================================
                Weddell seal  ======================================================================
        David's myotis (bat)  ======================================================================
               Big brown bat  ======================================================================
  D          Little brown bat  ======================================================================
B D                  Marmoset  ======================================================================
B D                       Dog  ======================================================================
B D                       Cow  ======================================================================
                Killer whale  ======================================================================

                        Human  agatggggttttgtgatgttggccaggctggtcttgtactcccaacctcaggtg
                        Chimp  agatggggttttgtgatgttggccaggctggtcttgaactcccaacttcaggtg
                      Gorilla  agatggggttttgtgatgttggccaggctggtcttgaactcccaacctcaggtg
                    Orangutan  agat-ggattttgtgatgttggccaggctggtcttgaactcccaacctcagg--
                       Rhesus  agacagggttttgtgatgttggccaggctggtgttgaactcctaacctcaggtg
          Crab-eating macaque  agacagggttttgtgatgttggccaggctggtgttgaactcctaacctcaggtg
                 Green monkey  agacagggttttgtgatgttggccaggctggtgttgaactcctaacctcaagtg
                     Hedgehog  ======================================================
                   Guinea pig  ======================================================
                         Pika  ======================================================
                       Rabbit  ======================================================
                   Coelacanth  ======================================================
                        Shrew  ======================================================
               Golden hamster  ======================================================
                       Baboon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
             Brush-tailed rat  ======================================================
                 Atlantic cod  ======================================================
                       Gibbon  ======================================================
                  Spotted gar  ======================================================
                  Stickleback  ======================================================
           Southern platyfish  ======================================================
       Yellowbelly pufferfish  ======================================================
                         Fugu  ======================================================
                    Tetraodon  ======================================================
                      Chicken  ======================================================
                 Mallard duck  ======================================================
           Tibetan ground jay  ======================================================
                  Zebra finch  ======================================================
                       Medaka  ======================================================
          Pundamilia nyererei  ======================================================
                  Zebra mbuna  ======================================================
        Burton's mouthbreeder  ======================================================
          Princess of Burundi  ======================================================
                 Nile tilapia  ======================================================
               Painted turtle  ======================================================
              Green seaturtle  ======================================================
           American alligator  ======================================================
                Scarlet macaw  ======================================================
                      Opossum  ======================================================
                   Chinchilla  ======================================================
               Naked mole-rat  ======================================================
       Lesser Egyptian jerboa  ======================================================
                  Rock pigeon  ======================================================
          Collared flycatcher  ======================================================
          Medium ground finch  ======================================================
                       Lizard  ======================================================
             Peregrine falcon  ======================================================
                 Saker falcon  ======================================================
             Cape golden mole  ======================================================
           Chinese tree shrew  ======================================================
          Cape elephant shrew  ======================================================
                     Platypus  ======================================================
                      Manatee  ======================================================
              Chinese hamster  ======================================================
                 Prairie vole  ======================================================
                     Aardvark  ======================================================
                     Elephant  ======================================================
                       Tenrec  ======================================================
                          Cat  ======================================================
                      Megabat  ======================================================
                     Bushbaby  ======================================================
                          Pig  ======================================================
     Chinese softshell turtle  ======================================================
                      Ferret   ======================================================
                      Dolphin  ======================================================
                          Rat  ======================================================
                        Mouse  ======================================================
                        Panda  ======================================================
                Domestic goat  ======================================================
                        Sheep  ======================================================
             Tibetan antelope  ======================================================
              Star-nosed mole  ======================================================
               Bactrian camel  ======================================================
                       Alpaca  ======================================================
               Pacific walrus  ======================================================
             Black flying-fox  ======================================================
             White rhinoceros  ======================================================
                        Horse  ======================================================
                     Squirrel  ======================================================
                    Armadillo  ======================================================
                 Weddell seal  ======================================================
         David's myotis (bat)  ======================================================
                Big brown bat  ======================================================
             Little brown bat  ======================================================
                     Marmoset  ======================================================
                          Dog  ======================================================
                          Cow  ======================================================
                 Killer whale  ======================================================

Alignment block 2 of 641 in window, 56695100 - 56695257, 158 bps 
B D                     Human  atccaccagccttggcctcccaaagtgctaagatgacaggcgtgagccactgcgcctggccac-ttcgag
B D                     Chimp  atccaccagccttggcctcccaaagtgctaagatgacaggcgtgagccactgcgcctggccac-tacgag
B D                   Gorilla  atccaccagccttggcctcccaaagtgctaagatgac--gcgtgaaccactgcgcctggccac-tacgag
B D                 Orangutan  ------------tggcctcccaaagtgctaggatgacaagcgtgagccactgcacctggccacgtacgag
B D                    Rhesus  atccaccagcctcagcctcccaaagtgctaggatgacaggagtgagccactgtgcgtggccacttatgag
B D       Crab-eating macaque  atccaccagcctcagcctcccaaagtgctaggatgacaggagtgagccactgtgcgtggccacttacaag
B D                    Baboon  atccaccagcctcagcctcccaaagtgctaggatgacaggcgtgagccactgtgcgtggccacttacgag
B D              Green monkey  atccaccaacctcagcctcccaaagtgctaggatgacaggagtgagccactgtgcctggccatttacgag
B D                  Hedgehog  ======================================================================
B D                Guinea pig  ======================================================================
B D                      Pika  ======================================================================
B D                    Rabbit  ======================================================================
B D                Coelacanth  ======================================================================
B D                     Shrew  ======================================================================
              Golden hamster  ======================================================================
            Brush-tailed rat  ======================================================================
B D              Atlantic cod  ======================================================================
B D                    Gibbon  ======================================================================
                 Spotted gar  ======================================================================
B D               Stickleback  ======================================================================
          Southern platyfish  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                      Fugu  ======================================================================
B D                 Tetraodon  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
B D                    Medaka  ======================================================================
         Pundamilia nyererei  ======================================================================
                 Zebra mbuna  ======================================================================
       Burton's mouthbreeder  ======================================================================
         Princess of Burundi  ======================================================================
B D              Nile tilapia  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D        American alligator  ======================================================================
  D             Scarlet macaw  ======================================================================
B D                   Opossum  ======================================================================
                  Chinchilla  ======================================================================
B D            Naked mole-rat  ======================================================================
      Lesser Egyptian jerboa  ======================================================================
  D               Rock pigeon  ======================================================================
  D       Collared flycatcher  ======================================================================
B D       Medium ground finch  ======================================================================
B D                    Lizard  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
            Cape golden mole  ======================================================================
          Chinese tree shrew  ======================================================================
         Cape elephant shrew  ======================================================================
B D                  Platypus  ======================================================================
B D                   Manatee  ======================================================================
B D           Chinese hamster  ======================================================================
                Prairie vole  ======================================================================
                    Aardvark  ======================================================================
B D                  Elephant  ======================================================================
B D                    Tenrec  ======================================================================
B D                       Cat  ======================================================================
B D                   Megabat  ======================================================================
B D                  Bushbaby  ======================================================================
B D                       Pig  ======================================================================
  D  Chinese softshell turtle  ======================================================================
B D                   Ferret   ======================================================================
B D                   Dolphin  ======================================================================
B D                       Rat  ======================================================================
B D                     Mouse  ======================================================================
B D                     Panda  ======================================================================
               Domestic goat  ======================================================================
B D                     Sheep  ======================================================================
            Tibetan antelope  ======================================================================
             Star-nosed mole  ======================================================================
              Bactrian camel  ======================================================================
B D                    Alpaca  ======================================================================
              Pacific walrus  ======================================================================
            Black flying-fox  ======================================================================
B D          White rhinoceros  ======================================================================
B D                     Horse  ======================================================================
B D                  Squirrel  ======================================================================
B D                 Armadillo  ======================================================================
                Weddell seal  ======================================================================
        David's myotis (bat)  ======================================================================
               Big brown bat  ======================================================================
  D          Little brown bat  ======================================================================
B D                  Marmoset  ======================================================================
B D                       Dog  ======================================================================
B D                       Cow  ======================================================================
                Killer whale  ======================================================================

                        Human  aatctaatgcttgatggaacggtttcattccaaaactattccctcaccatggaaaaacttgtcttgcaca
                        Chimp  aatctaatgcttgatggaacggtttcattccaaaactattccctcaccatggaaaaacttgtcttgcaca
                      Gorilla  aatctaatgcttgatggaacggtttcattccaaaactattccctcaccatggaaaaacttgtcttgcaca
                    Orangutan  aatctaatacttgatggaacggtttctttccaaaactattccctcaccgtggaaaaacttgtcttgcata
                       Rhesus  aatctaatgcttgatggaacagtttcattccaaaactattccctcaccatggaaaaacttgtcttgcaca
          Crab-eating macaque  aatctaatgcttgatggaacagtttcattccaaaactattccctcaccatggaaaaacttgtcttgcaca
                       Baboon  aatctaatgcttgatggaacagtttcattccaaaactattccctcaccatggaaaaacttgtcttgcaca
                 Green monkey  aatctaatgcttgatggaacagtttcattccaaaactattctctcaccatggaaaaacttgtcttgcaca
                     Hedgehog  ======================================================================
                   Guinea pig  ======================================================================
                         Pika  ======================================================================
                       Rabbit  ======================================================================
                   Coelacanth  ======================================================================
                        Shrew  ======================================================================
               Golden hamster  ======================================================================
             Brush-tailed rat  ======================================================================
                 Atlantic cod  ======================================================================
                       Gibbon  ======================================================================
                  Spotted gar  ======================================================================
                  Stickleback  ======================================================================
           Southern platyfish  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                         Fugu  ======================================================================
                    Tetraodon  ======================================================================
                      Chicken  ======================================================================
                 Mallard duck  ======================================================================
           Tibetan ground jay  ======================================================================
                  Zebra finch  ======================================================================
                       Medaka  ======================================================================
          Pundamilia nyererei  ======================================================================
                  Zebra mbuna  ======================================================================
        Burton's mouthbreeder  ======================================================================
          Princess of Burundi  ======================================================================
                 Nile tilapia  ======================================================================
               Painted turtle  ======================================================================
              Green seaturtle  ======================================================================
           American alligator  ======================================================================
                Scarlet macaw  ======================================================================
                      Opossum  ======================================================================
                   Chinchilla  ======================================================================
               Naked mole-rat  ======================================================================
       Lesser Egyptian jerboa  ======================================================================
                  Rock pigeon  ======================================================================
          Collared flycatcher  ======================================================================
          Medium ground finch  ======================================================================
                       Lizard  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
             Cape golden mole  ======================================================================
           Chinese tree shrew  ======================================================================
          Cape elephant shrew  ======================================================================
                     Platypus  ======================================================================
                      Manatee  ======================================================================
              Chinese hamster  ======================================================================
                 Prairie vole  ======================================================================
                     Aardvark  ======================================================================
                     Elephant  ======================================================================
                       Tenrec  ======================================================================
                          Cat  ======================================================================
                      Megabat  ======================================================================
                     Bushbaby  ======================================================================
                          Pig  ======================================================================
     Chinese softshell turtle  ======================================================================
                      Ferret   ======================================================================
                      Dolphin  ======================================================================
                          Rat  ======================================================================
                        Mouse  ======================================================================
                        Panda  ======================================================================
                Domestic goat  ======================================================================
                        Sheep  ======================================================================
             Tibetan antelope  ======================================================================
              Star-nosed mole  ======================================================================
               Bactrian camel  ======================================================================
                       Alpaca  ======================================================================
               Pacific walrus  ======================================================================
             Black flying-fox  ======================================================================
             White rhinoceros  ======================================================================
                        Horse  ======================================================================
                     Squirrel  ======================================================================
                    Armadillo  ======================================================================
                 Weddell seal  ======================================================================
         David's myotis (bat)  ======================================================================
                Big brown bat  ======================================================================
             Little brown bat  ======================================================================
                     Marmoset  ======================================================================
                          Dog  ======================================================================
                          Cow  ======================================================================
                 Killer whale  ======================================================================

                        Human  aaacccatttctggtgcca
                        Chimp  aaacccatttctggtgcca
                      Gorilla  aaacccatttctgatgcca
                    Orangutan  aaacccatttctggtgcca
                       Rhesus  aaacccatttctggtgcca
          Crab-eating macaque  aaacccatttctggtgcca
                       Baboon  aaacccatttctggtgcca
                 Green monkey  aaacccatttctggtgcca
                     Hedgehog  ===================
                   Guinea pig  ===================
                         Pika  ===================
                       Rabbit  ===================
                   Coelacanth  ===================
                        Shrew  ===================
               Golden hamster  ===================
             Brush-tailed rat  ===================
                 Atlantic cod  ===================
                       Gibbon  ===================
                  Spotted gar  ===================
                  Stickleback  ===================
           Southern platyfish  ===================
       Yellowbelly pufferfish  ===================
                         Fugu  ===================
                    Tetraodon  ===================
                      Chicken  ===================
                 Mallard duck  ===================
           Tibetan ground jay  ===================
                  Zebra finch  ===================
                       Medaka  ===================
          Pundamilia nyererei  ===================
                  Zebra mbuna  ===================
        Burton's mouthbreeder  ===================
          Princess of Burundi  ===================
                 Nile tilapia  ===================
               Painted turtle  ===================
              Green seaturtle  ===================
           American alligator  ===================
                Scarlet macaw  ===================
                      Opossum  ===================
                   Chinchilla  ===================
               Naked mole-rat  ===================
       Lesser Egyptian jerboa  ===================
                  Rock pigeon  ===================
          Collared flycatcher  ===================
          Medium ground finch  ===================
                       Lizard  ===================
             Peregrine falcon  ===================
                 Saker falcon  ===================
             Cape golden mole  ===================
           Chinese tree shrew  ===================
          Cape elephant shrew  ===================
                     Platypus  ===================
                      Manatee  ===================
              Chinese hamster  ===================
                 Prairie vole  ===================
                     Aardvark  ===================
                     Elephant  ===================
                       Tenrec  ===================
                          Cat  ===================
                      Megabat  ===================
                     Bushbaby  ===================
                          Pig  ===================
     Chinese softshell turtle  ===================
                      Ferret   ===================
                      Dolphin  ===================
                          Rat  ===================
                        Mouse  ===================
                        Panda  ===================
                Domestic goat  ===================
                        Sheep  ===================
             Tibetan antelope  ===================
              Star-nosed mole  ===================
               Bactrian camel  ===================
                       Alpaca  ===================
               Pacific walrus  ===================
             Black flying-fox  ===================
             White rhinoceros  ===================
                        Horse  ===================
                     Squirrel  ===================
                    Armadillo  ===================
                 Weddell seal  ===================
         David's myotis (bat)  ===================
                Big brown bat  ===================
             Little brown bat  ===================
                     Marmoset  ===================
                          Dog  ===================
                          Cow  ===================
                 Killer whale  ===================

Alignment block 3 of 641 in window, 56695258 - 56695274, 17 bps 
B D                     Human  aaaactttgaggaccac
B D                     Chimp  aaaacattgaggaccac
B D                   Gorilla  aaaacattgaggaccac
B D                 Orangutan  aaaacattgaggaccac
B D                    Rhesus  aaaacattgagcaccac
B D       Crab-eating macaque  aaaacattgaggaccac
B D                    Baboon  aaaacattgaggaccac
B D              Green monkey  aaaacattgaggaccac
B D                     Horse  aaatcttctaaaaatgg
B D          White rhinoceros  aaatcttctaaaaatgg
  D          Little brown bat  aaatcttctaaaaatgg
B D                  Hedgehog  =================
B D                Guinea pig  =================
B D                      Pika  =================
B D                    Rabbit  =================
B D                Coelacanth  =================
B D                     Shrew  =================
              Golden hamster  =================
            Brush-tailed rat  =================
B D              Atlantic cod  =================
B D                    Gibbon  =================
                 Spotted gar  =================
B D               Stickleback  =================
          Southern platyfish  =================
      Yellowbelly pufferfish  =================
B D                      Fugu  =================
B D                 Tetraodon  =================
B D                   Chicken  =================
  D              Mallard duck  =================
          Tibetan ground jay  =================
B D               Zebra finch  =================
B D                    Medaka  =================
         Pundamilia nyererei  =================
                 Zebra mbuna  =================
       Burton's mouthbreeder  =================
         Princess of Burundi  =================
B D              Nile tilapia  =================
  D            Painted turtle  =================
  D           Green seaturtle  =================
B D        American alligator  =================
  D             Scarlet macaw  =================
B D                   Opossum  =================
                  Chinchilla  =================
B D            Naked mole-rat  =================
      Lesser Egyptian jerboa  =================
  D               Rock pigeon  =================
  D       Collared flycatcher  =================
B D       Medium ground finch  =================
B D                    Lizard  =================
  D          Peregrine falcon  =================
  D              Saker falcon  =================
            Cape golden mole  =================
          Chinese tree shrew  =================
         Cape elephant shrew  =================
B D                  Platypus  =================
B D                   Manatee  =================
B D           Chinese hamster  =================
                Prairie vole  =================
                    Aardvark  =================
B D                  Elephant  =================
B D                    Tenrec  =================
B D                       Cat  =================
B D                   Megabat  =================
B D                  Bushbaby  =================
B D                       Pig  =================
  D  Chinese softshell turtle  =================
B D                   Ferret   =================
B D                   Dolphin  =================
B D                       Rat  =================
B D                     Mouse  =================
B D                     Panda  =================
               Domestic goat  =================
B D                     Sheep  =================
            Tibetan antelope  =================
             Star-nosed mole  =================
              Bactrian camel  =================
B D                    Alpaca  =================
              Pacific walrus  =================
            Black flying-fox  =================
B D                  Squirrel  =================
B D                 Armadillo  =================
                Weddell seal  =================
        David's myotis (bat)  =================
               Big brown bat  =================
B D                  Marmoset  =================
B D                       Dog  =================
B D                       Cow  =================
                Killer whale  =================

Alignment block 4 of 641 in window, 56695275 - 56695276, 2 bps 
B D                     Human  tg
B D                     Chimp  tg
B D                   Gorilla  tg
B D                 Orangutan  tg
B D                    Rhesus  tg
B D       Crab-eating macaque  tg
B D                    Baboon  tg
B D              Green monkey  tg
B D                     Horse  tc
B D          White rhinoceros  tc
B D                   Ferret   ta
B D                     Panda  ta
                 Weddell seal  ta
  D          Little brown bat  tc
B D                 Armadillo  tg
B D                  Hedgehog  ==
B D                Guinea pig  ==
B D                      Pika  ==
B D                    Rabbit  ==
B D                Coelacanth  ==
B D                     Shrew  ==
              Golden hamster  ==
            Brush-tailed rat  ==
B D              Atlantic cod  ==
B D                    Gibbon  ==
                 Spotted gar  ==
B D               Stickleback  ==
          Southern platyfish  ==
      Yellowbelly pufferfish  ==
B D                      Fugu  ==
B D                 Tetraodon  ==
B D                   Chicken  ==
  D              Mallard duck  ==
          Tibetan ground jay  ==
B D               Zebra finch  ==
B D                    Medaka  ==
         Pundamilia nyererei  ==
                 Zebra mbuna  ==
       Burton's mouthbreeder  ==
         Princess of Burundi  ==
B D              Nile tilapia  ==
  D            Painted turtle  ==
  D           Green seaturtle  ==
B D        American alligator  ==
  D             Scarlet macaw  ==
B D                   Opossum  ==
                  Chinchilla  ==
B D            Naked mole-rat  ==
      Lesser Egyptian jerboa  ==
  D               Rock pigeon  ==
  D       Collared flycatcher  ==
B D       Medium ground finch  ==
B D                    Lizard  ==
  D          Peregrine falcon  ==
  D              Saker falcon  ==
            Cape golden mole  ==
          Chinese tree shrew  ==
         Cape elephant shrew  ==
B D                  Platypus  ==
B D                   Manatee  ==
B D           Chinese hamster  ==
                Prairie vole  ==
                    Aardvark  ==
B D                  Elephant  ==
B D                    Tenrec  ==
B D                       Cat  ==
B D                   Megabat  ==
B D                  Bushbaby  ==
B D                       Pig  ==
  D  Chinese softshell turtle  ==
B D                   Dolphin  ==
B D                       Rat  ==
B D                     Mouse  ==
               Domestic goat  ==
B D                     Sheep  ==
            Tibetan antelope  ==
             Star-nosed mole  ==
              Bactrian camel  ==
B D                    Alpaca  ==
              Pacific walrus  ==
            Black flying-fox  ==
B D                  Squirrel  ==
        David's myotis (bat)  ==
               Big brown bat  ==
B D                  Marmoset  ==
B D                       Dog  ==
B D                       Cow  ==
                Killer whale  ==

Alignment block 5 of 641 in window, 56695277 - 56695343, 67 bps 
B D                     Human  ttctaccccaaacatcaccttatc------ttatgtttacatctga-------agtttatattatagaaa
B D                     Chimp  ttctaccccaaacatcaccttatc------ttatgtttacatctga-------agtttatattatagaaa
B D                   Gorilla  ttctaccccaaacatcaccttatc------ttatgtttacgtctga-------agtttatattatagaaa
B D                 Orangutan  ttctaccccaaacatcaccttatc------ttatgtttacatctga-------agtttatattatagaaa
B D                    Rhesus  ttctaccccaaacatcaccttata------ttat--------------------gtttatattatagaaa
B D       Crab-eating macaque  ttctaccccaaacatcaccttata------ttat--------------------gtttatattatagaaa
B D                    Baboon  ttctaccccaaacatcaccttata------ttat--------------------gtttatattatagaaa
B D              Green monkey  ttctaccccaaacatcaccttata------ttat--------------------gtttatattatagaaa
B D                    Alpaca  ttctacccacaacatcaccttacagcatatagatgtagacatatagattccagagtttacattgtagaaa
               Bactrian camel  ttctaccccaaacatcaccttacagcatatagatatagacatatagattccagagtttacattgtagaaa
B D                   Dolphin  ttctaccccaaacatcaccttacagc---------------------------tgttcatgttgtagaaa
                 Killer whale  ttctaccccaaacatcaccttacagc---------------------------agttcatgttgtagaaa
B D                     Sheep  ttctaccccaaacatcaccttactgc---------------------------agttcatattgtagaaa
                Domestic goat  ttctaccccaaacatcaccttactgc---------------------------agttcatattgtagaaa
B D                     Horse  ttctacccaaaacatcacct-------------catatatacctgg-------agttcataatgtagaaa
B D          White rhinoceros  ttctaccccaaacatcacct-------------catatatacctgg-------agttcatattatagaaa
B D                   Ferret   ttctatcccaaataacaccttaca------gtatatacataccttg-------agttcatagtatagaaa
B D                     Panda  ttctatcccaaatatcaccttata------gtatatacatacctag-------agttcgtagtatagaaa
                 Weddell seal  ttctatcccaaatatcaccttaca------gtatatacatacctag-------agttcatagtatagaaa
             Black flying-fox  ttgcaccccaaactttaccg----------atgtatatacatgtgg-------agtttatactatagaaa
B D                   Megabat  ttgcaccccaaactttaccg----------atatatatacatgtgg-------agtttatattatagaaa
  D          Little brown bat  ttctcccccaaacattaacttgtagc----atgtatgtaaacatgg-------agttcatattatagaaa
B D                 Armadillo  gtctgtcccaaacatcacttttta------gtatatatacatgt---------agtttatatcatagaaa
B D                  Hedgehog  ======================================================================
B D                Guinea pig  ======================================================================
B D                      Pika  ======================================================================
B D                    Rabbit  ======================================================================
B D                Coelacanth  ======================================================================
B D                     Shrew  ======================================================================
              Golden hamster  ======================================================================
            Brush-tailed rat  ======================================================================
B D              Atlantic cod  ======================================================================
B D                    Gibbon  ======================================================================
                 Spotted gar  ======================================================================
B D               Stickleback  ======================================================================
          Southern platyfish  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                      Fugu  ======================================================================
B D                 Tetraodon  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
B D                    Medaka  ======================================================================
         Pundamilia nyererei  ======================================================================
                 Zebra mbuna  ======================================================================
       Burton's mouthbreeder  ======================================================================
         Princess of Burundi  ======================================================================
B D              Nile tilapia  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D        American alligator  ======================================================================
  D             Scarlet macaw  ======================================================================
B D                   Opossum  ======================================================================
                  Chinchilla  ======================================================================
B D            Naked mole-rat  ======================================================================
      Lesser Egyptian jerboa  ======================================================================
  D               Rock pigeon  ======================================================================
  D       Collared flycatcher  ======================================================================
B D       Medium ground finch  ======================================================================
B D                    Lizard  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
            Cape golden mole  ======================================================================
          Chinese tree shrew  ======================================================================
         Cape elephant shrew  ======================================================================
B D                  Platypus  ======================================================================
B D                   Manatee  ======================================================================
B D           Chinese hamster  ======================================================================
                Prairie vole  ======================================================================
                    Aardvark  ======================================================================
B D                  Elephant  ======================================================================
B D                    Tenrec  ======================================================================
B D                       Cat  ======================================================================
B D                  Bushbaby  ======================================================================
B D                       Pig  ======================================================================
  D  Chinese softshell turtle  ======================================================================
B D                       Rat  ======================================================================
B D                     Mouse  ======================================================================
            Tibetan antelope  ======================================================================
             Star-nosed mole  ======================================================================
              Pacific walrus  ======================================================================
B D                  Squirrel  ======================================================================
        David's myotis (bat)  ======================================================================
               Big brown bat  ======================================================================
B D                  Marmoset  ======================================================================
B D                       Dog  ======================================================================
B D                       Cow  ======================================================================

                        Human  ataagaccat
                        Chimp  ataagaccat
                      Gorilla  ataagaccat
                    Orangutan  ataagaccat
                       Rhesus  ataagacccc
          Crab-eating macaque  ataagacccc
                       Baboon  ataagacccc
                 Green monkey  ataagacccc
                       Alpaca  ataagacagt
               Bactrian camel  ataagacagt
                      Dolphin  ataagac---
                 Killer whale  ataagac---
                        Sheep  atatgacaat
                Domestic goat  atatgacaat
                        Horse  ataagaccat
             White rhinoceros  ataagactat
                      Ferret   attagactat
                        Panda  atgaagctat
                 Weddell seal  atgagactat
             Black flying-fox  atgagactgt
                      Megabat  atgagactgt
             Little brown bat  ataagactat
                    Armadillo  ataagacaat
                     Hedgehog  ==========
                   Guinea pig  ==========
                         Pika  ==========
                       Rabbit  ==========
                   Coelacanth  ==========
                        Shrew  ==========
               Golden hamster  ==========
             Brush-tailed rat  ==========
                 Atlantic cod  ==========
                       Gibbon  ==========
                  Spotted gar  ==========
                  Stickleback  ==========
           Southern platyfish  ==========
       Yellowbelly pufferfish  ==========
                         Fugu  ==========
                    Tetraodon  ==========
                      Chicken  ==========
                 Mallard duck  ==========
           Tibetan ground jay  ==========
                  Zebra finch  ==========
                       Medaka  ==========
          Pundamilia nyererei  ==========
                  Zebra mbuna  ==========
        Burton's mouthbreeder  ==========
          Princess of Burundi  ==========
                 Nile tilapia  ==========
               Painted turtle  ==========
              Green seaturtle  ==========
           American alligator  ==========
                Scarlet macaw  ==========
                      Opossum  ==========
                   Chinchilla  ==========
               Naked mole-rat  ==========
       Lesser Egyptian jerboa  ==========
                  Rock pigeon  ==========
          Collared flycatcher  ==========
          Medium ground finch  ==========
                       Lizard  ==========
             Peregrine falcon  ==========
                 Saker falcon  ==========
             Cape golden mole  ==========
           Chinese tree shrew  ==========
          Cape elephant shrew  ==========
                     Platypus  ==========
                      Manatee  ==========
              Chinese hamster  ==========
                 Prairie vole  ==========
                     Aardvark  ==========
                     Elephant  ==========
                       Tenrec  ==========
                          Cat  ==========
                     Bushbaby  ==========
                          Pig  ==========
     Chinese softshell turtle  ==========
                          Rat  ==========
                        Mouse  ==========
             Tibetan antelope  ==========
              Star-nosed mole  ==========
               Pacific walrus  ==========
                     Squirrel  ==========
         David's myotis (bat)  ==========
                Big brown bat  ==========
                     Marmoset  ==========
                          Dog  ==========
                          Cow  ==========

Inserts between block 5 and 6 in window
B D                    Sheep 1128bp
               Domestic goat 1087bp
B D                    Panda 1346bp
                Weddell seal 4bp
B D                Armadillo 2336bp

Alignment block 6 of 641 in window, 56695344 - 56695349, 6 bps 
B D                     Human  tgagtg
B D                     Chimp  tgagtg
B D                   Gorilla  tgagtg
B D                 Orangutan  tgagtg
B D                    Rhesus  tgagtg
B D       Crab-eating macaque  tgagtg
B D                    Baboon  tgattg
B D              Green monkey  tgagtg
B D                    Alpaca  agagtg
               Bactrian camel  agagtg
B D                   Dolphin  --aata
                 Killer whale  --aata
B D                     Horse  -----a
B D          White rhinoceros  -----a
B D                   Ferret   --aggg
                 Weddell seal  caagtg
             Black flying-fox  -----a
B D                   Megabat  -----a
B D                  Hedgehog  ======
B D                Guinea pig  ======
B D                      Pika  ======
B D                    Rabbit  ======
B D                Coelacanth  ======
B D                     Shrew  ======
              Golden hamster  ======
            Brush-tailed rat  ======
B D              Atlantic cod  ======
B D                    Gibbon  ======
                 Spotted gar  ======
B D               Stickleback  ======
          Southern platyfish  ======
      Yellowbelly pufferfish  ======
B D                      Fugu  ======
B D                 Tetraodon  ======
B D                   Chicken  ======
  D              Mallard duck  ======
          Tibetan ground jay  ======
B D               Zebra finch  ======
B D                    Medaka  ======
         Pundamilia nyererei  ======
                 Zebra mbuna  ======
       Burton's mouthbreeder  ======
         Princess of Burundi  ======
B D              Nile tilapia  ======
  D            Painted turtle  ======
  D           Green seaturtle  ======
B D        American alligator  ======
  D             Scarlet macaw  ======
B D                   Opossum  ======
                  Chinchilla  ======
B D            Naked mole-rat  ======
      Lesser Egyptian jerboa  ======
  D               Rock pigeon  ======
  D       Collared flycatcher  ======
B D       Medium ground finch  ======
B D                    Lizard  ======
  D          Peregrine falcon  ======
  D              Saker falcon  ======
            Cape golden mole  ======
          Chinese tree shrew  ======
         Cape elephant shrew  ======
B D                  Platypus  ======
B D                   Manatee  ======
B D           Chinese hamster  ======
                Prairie vole  ======
                    Aardvark  ======
B D                  Elephant  ======
B D                    Tenrec  ======
B D                       Cat  ======
B D                  Bushbaby  ======
B D                       Pig  ======
  D  Chinese softshell turtle  ======
B D                       Rat  ======
B D                     Mouse  ======
B D                     Panda  ======
               Domestic goat  ======
B D                     Sheep  ======
            Tibetan antelope  ======
             Star-nosed mole  ======
              Pacific walrus  ======
B D                  Squirrel  ======
B D                 Armadillo  ======
        David's myotis (bat)  ======
               Big brown bat  ======
  D          Little brown bat  ------
B D                  Marmoset  ======
B D                       Dog  ======
B D                       Cow  ======

Inserts between block 6 and 7 in window
B D                   Alpaca 956bp
              Bactrian camel 956bp

Alignment block 7 of 641 in window, 56695350 - 56695363, 14 bps 
B D                     Human  ggc--agggtggctca
B D                     Chimp  ggc--agggtggctca
B D                   Gorilla  ggc--agggtggctca
B D                 Orangutan  ggc--agggtggctca
B D                    Rhesus  ggc--agggtggctca
B D       Crab-eating macaque  ggc--agggtggctca
B D                    Baboon  ggc--agggtggctca
B D              Green monkey  ggc--agggtgac-ca
B D                   Dolphin  aat--agagtgatata
                 Killer whale  aat--agagtgatata
B D                     Horse  aaa--agagtgatata
B D          White rhinoceros  aaa--agagtgatata
B D                   Ferret   gcacctgggtg-----
                 Weddell seal  ata--tgagtgctata
             Black flying-fox  aaa--agagtggtatg
B D                   Megabat  aaa--agagtggtatg
  D          Little brown bat  aaa--agagtgaaata
B D                  Hedgehog  ================
B D                Guinea pig  ================
B D                      Pika  ================
B D                    Rabbit  ================
B D                Coelacanth  ================
B D                     Shrew  ================
              Golden hamster  ================
            Brush-tailed rat  ================
B D              Atlantic cod  ================
B D                    Gibbon  ================
                 Spotted gar  ================
B D               Stickleback  ================
          Southern platyfish  ================
      Yellowbelly pufferfish  ================
B D                      Fugu  ================
B D                 Tetraodon  ================
B D                   Chicken  ================
  D              Mallard duck  ================
          Tibetan ground jay  ================
B D               Zebra finch  ================
B D                    Medaka  ================
         Pundamilia nyererei  ================
                 Zebra mbuna  ================
       Burton's mouthbreeder  ================
         Princess of Burundi  ================
B D              Nile tilapia  ================
  D            Painted turtle  ================
  D           Green seaturtle  ================
B D        American alligator  ================
  D             Scarlet macaw  ================
B D                   Opossum  ================
                  Chinchilla  ================
B D            Naked mole-rat  ================
      Lesser Egyptian jerboa  ================
  D               Rock pigeon  ================
  D       Collared flycatcher  ================
B D       Medium ground finch  ================
B D                    Lizard  ================
  D          Peregrine falcon  ================
  D              Saker falcon  ================
            Cape golden mole  ================
          Chinese tree shrew  ================
         Cape elephant shrew  ================
B D                  Platypus  ================
B D                   Manatee  ================
B D           Chinese hamster  ================
                Prairie vole  ================
                    Aardvark  ================
B D                  Elephant  ================
B D                    Tenrec  ================
B D                       Cat  ================
B D                  Bushbaby  ================
B D                       Pig  ================
  D  Chinese softshell turtle  ================
B D                       Rat  ================
B D                     Mouse  ================
B D                     Panda  ================
               Domestic goat  ================
B D                     Sheep  ================
            Tibetan antelope  ================
             Star-nosed mole  ================
              Bactrian camel  ================
B D                    Alpaca  ================
              Pacific walrus  ================
B D                  Squirrel  ================
B D                 Armadillo  ================
        David's myotis (bat)  ================
               Big brown bat  ================
B D                  Marmoset  ================
B D                       Dog  ================
B D                       Cow  ================

Inserts between block 7 and 8 in window
B D                    Horse 6bp
B D         White rhinoceros 6bp
B D                  Ferret  1754bp
                Weddell seal 6bp
            Black flying-fox 6bp
B D                  Megabat 6bp
  D         Little brown bat 6bp

Alignment block 8 of 641 in window, 56695364 - 56695370, 7 bps 
B D                     Human  ttcctgt
B D                     Chimp  ttcctgt
B D                   Gorilla  ttcctgt
B D                 Orangutan  ttcttgt
B D                    Rhesus  ttcctgt
B D       Crab-eating macaque  ttcctgt
B D                    Baboon  ttcctgt
B D              Green monkey  ttcctgt
B D                   Dolphin  tgcttgt
                 Killer whale  tgcttgt
B D                     Horse  tttctat
B D          White rhinoceros  tttctat
                 Weddell seal  tttctat
             Black flying-fox  tttctat
B D                   Megabat  tttctat
  D          Little brown bat  tttctat
B D                  Hedgehog  =======
B D                Guinea pig  =======
B D                      Pika  =======
B D                    Rabbit  =======
B D                Coelacanth  =======
B D                     Shrew  =======
              Golden hamster  =======
            Brush-tailed rat  =======
B D              Atlantic cod  =======
B D                    Gibbon  =======
                 Spotted gar  =======
B D               Stickleback  =======
          Southern platyfish  =======
      Yellowbelly pufferfish  =======
B D                      Fugu  =======
B D                 Tetraodon  =======
B D                   Chicken  =======
  D              Mallard duck  =======
          Tibetan ground jay  =======
B D               Zebra finch  =======
B D                    Medaka  =======
         Pundamilia nyererei  =======
                 Zebra mbuna  =======
       Burton's mouthbreeder  =======
         Princess of Burundi  =======
B D              Nile tilapia  =======
  D            Painted turtle  =======
  D           Green seaturtle  =======
B D        American alligator  =======
  D             Scarlet macaw  =======
B D                   Opossum  =======
                  Chinchilla  =======
B D            Naked mole-rat  =======
      Lesser Egyptian jerboa  =======
  D               Rock pigeon  =======
  D       Collared flycatcher  =======
B D       Medium ground finch  =======
B D                    Lizard  =======
  D          Peregrine falcon  =======
  D              Saker falcon  =======
            Cape golden mole  =======
          Chinese tree shrew  =======
         Cape elephant shrew  =======
B D                  Platypus  =======
B D                   Manatee  =======
B D           Chinese hamster  =======
                Prairie vole  =======
                    Aardvark  =======
B D                  Elephant  =======
B D                    Tenrec  =======
B D                       Cat  =======
B D                  Bushbaby  =======
B D                       Pig  =======
  D  Chinese softshell turtle  =======
B D                   Ferret   =======
B D                       Rat  =======
B D                     Mouse  =======
B D                     Panda  =======
               Domestic goat  =======
B D                     Sheep  =======
            Tibetan antelope  =======
             Star-nosed mole  =======
              Bactrian camel  =======
B D                    Alpaca  =======
              Pacific walrus  =======
B D                  Squirrel  =======
B D                 Armadillo  =======
        David's myotis (bat)  =======
               Big brown bat  =======
B D                  Marmoset  =======
B D                       Dog  =======
B D                       Cow  =======

Inserts between block 8 and 9 in window
B D                  Dolphin 1303bp
                Killer whale 1302bp
  D         Little brown bat 2077bp

Alignment block 9 of 641 in window, 56695371 - 56695371, 1 bps 
B D                     Human  g
B D                     Chimp  g
B D                   Gorilla  g
B D                 Orangutan  g
B D                    Rhesus  a
B D       Crab-eating macaque  a
B D                    Baboon  a
B D              Green monkey  a
B D                     Horse  g
B D          White rhinoceros  g
                 Weddell seal  g
             Black flying-fox  g
B D                   Megabat  g
B D                  Hedgehog  =
B D                Guinea pig  =
B D                      Pika  =
B D                    Rabbit  =
B D                Coelacanth  =
B D                     Shrew  =
              Golden hamster  =
            Brush-tailed rat  =
B D              Atlantic cod  =
B D                    Gibbon  =
                 Spotted gar  =
B D               Stickleback  =
          Southern platyfish  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                 Tetraodon  =
B D                   Chicken  =
  D              Mallard duck  =
          Tibetan ground jay  =
B D               Zebra finch  =
B D                    Medaka  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D              Nile tilapia  =
  D            Painted turtle  =
  D           Green seaturtle  =
B D        American alligator  =
  D             Scarlet macaw  =
B D                   Opossum  =
                  Chinchilla  =
B D            Naked mole-rat  =
      Lesser Egyptian jerboa  =
  D               Rock pigeon  =
  D       Collared flycatcher  =
B D       Medium ground finch  =
B D                    Lizard  =
  D          Peregrine falcon  =
  D              Saker falcon  =
            Cape golden mole  =
          Chinese tree shrew  =
         Cape elephant shrew  =
B D                  Platypus  =
B D                   Manatee  =
B D           Chinese hamster  =
                Prairie vole  =
                    Aardvark  =
B D                  Elephant  =
B D                    Tenrec  =
B D                       Cat  =
B D                  Bushbaby  =
B D                       Pig  =
  D  Chinese softshell turtle  =
B D                   Ferret   =
B D                   Dolphin  =
B D                       Rat  =
B D                     Mouse  =
B D                     Panda  =
               Domestic goat  =
B D                     Sheep  =
            Tibetan antelope  =
             Star-nosed mole  =
              Bactrian camel  =
B D                    Alpaca  =
              Pacific walrus  =
B D                  Squirrel  =
B D                 Armadillo  =
        David's myotis (bat)  =
               Big brown bat  =
  D          Little brown bat  =
B D                  Marmoset  =
B D                       Dog  =
B D                       Cow  =
                Killer whale  =

Inserts between block 9 and 10 in window
B D                    Horse 1412bp
B D         White rhinoceros 1369bp
                Weddell seal 1397bp
            Black flying-fox 2306bp
B D                  Megabat 2287bp

Alignment block 10 of 641 in window, 56695372 - 56695515, 144 bps 
B D                     Human  atcccagtacttagggggccaagatgggaggtttgcttgagcccaggagtttgagaccagcctggactac
B D                     Chimp  atcccagtacttagggggccaagatgggaggtttgcttgagtccaggagtttgagaccagcctggacaac
B D                   Gorilla  atcccagtacttggggggccaagatgggaggtttgcttgagcccaggagtttgagaccagcctggacaac
B D                 Orangutan  atcccagtacttggggggccaagatgggaggtttgcttgagcccaggagtttgagaccagcctggacaac
B D                    Rhesus  atcccagtacttggggggccaagacgggaggattgcttgaacccaggagtttgagaccaacctggacaac
B D       Crab-eating macaque  atcccagtacttggggggccaagacgggaggattgcttgaacccaggagtttgagaccaacctggacaac
B D                    Baboon  atcccagtacttggggggccaagacgggaggattgcttgaacccaggagtttgataccaacctggacaac
B D              Green monkey  atcccagtactt-gggggccaagacaggaggatttcttgaacccaggagtttgagaccaacctggacaac
B D                  Hedgehog  ======================================================================
B D                Guinea pig  ======================================================================
B D                      Pika  ======================================================================
B D                    Rabbit  ======================================================================
B D                Coelacanth  ======================================================================
B D                     Shrew  ======================================================================
              Golden hamster  ======================================================================
            Brush-tailed rat  ======================================================================
B D              Atlantic cod  ======================================================================
B D                    Gibbon  ======================================================================
                 Spotted gar  ======================================================================
B D               Stickleback  ======================================================================
          Southern platyfish  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                      Fugu  ======================================================================
B D                 Tetraodon  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
B D                    Medaka  ======================================================================
         Pundamilia nyererei  ======================================================================
                 Zebra mbuna  ======================================================================
       Burton's mouthbreeder  ======================================================================
         Princess of Burundi  ======================================================================
B D              Nile tilapia  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D        American alligator  ======================================================================
  D             Scarlet macaw  ======================================================================
B D                   Opossum  ======================================================================
                  Chinchilla  ======================================================================
B D            Naked mole-rat  ======================================================================
      Lesser Egyptian jerboa  ======================================================================
  D               Rock pigeon  ======================================================================
  D       Collared flycatcher  ======================================================================
B D       Medium ground finch  ======================================================================
B D                    Lizard  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
            Cape golden mole  ======================================================================
          Chinese tree shrew  ======================================================================
         Cape elephant shrew  ======================================================================
B D                  Platypus  ======================================================================
B D                   Manatee  ======================================================================
B D           Chinese hamster  ======================================================================
                Prairie vole  ======================================================================
                    Aardvark  ======================================================================
B D                  Elephant  ======================================================================
B D                    Tenrec  ======================================================================
B D                       Cat  ======================================================================
B D                   Megabat  ======================================================================
B D                  Bushbaby  ======================================================================
B D                       Pig  ======================================================================
  D  Chinese softshell turtle  ======================================================================
B D                   Ferret   ======================================================================
B D                   Dolphin  ======================================================================
B D                       Rat  ======================================================================
B D                     Mouse  ======================================================================
B D                     Panda  ======================================================================
               Domestic goat  ======================================================================
B D                     Sheep  ======================================================================
            Tibetan antelope  ======================================================================
             Star-nosed mole  ======================================================================
              Bactrian camel  ======================================================================
B D                    Alpaca  ======================================================================
              Pacific walrus  ======================================================================
            Black flying-fox  ======================================================================
B D          White rhinoceros  ======================================================================
B D                     Horse  ======================================================================
B D                  Squirrel  ======================================================================
B D                 Armadillo  ======================================================================
                Weddell seal  ======================================================================
        David's myotis (bat)  ======================================================================
               Big brown bat  ======================================================================
  D          Little brown bat  ======================================================================
B D                  Marmoset  ======================================================================
B D                       Dog  ======================================================================
B D                       Cow  ======================================================================
                Killer whale  ======================================================================

                        Human  atagggagagcctgtcactacaaaaaataaaaaattagccagatgtggtatatggtgatgctgggattac
                        Chimp  atagggagagcctgtcactacaaaaaataaaaaattagccagatgtggtatatggtgatgctgggattac
                      Gorilla  atagggagagcctgtcactacaaaaaataaaaaattagccagatgtggtatatggtgatgctgggattac
                    Orangutan  atagggagagcctgtcactacaaaaaataaaaaattagccagatgtggtatatggtgatgctgggattac
                       Rhesus  atagggagagcctgtcactac-gaaaataaaaaattagccagatgcggtatatggtgatgctgggattac
          Crab-eating macaque  atagggagagcctgtcactac-gaaaataaaaaattagccagatgtggtatatggtgatgctgggattac
                       Baboon  atagggagagcctgtcactac-gaaaataaaaaattagccagatgtggtatatggtgatgctgggattac
                 Green monkey  atagggagagcctgtcactac-gataataaaaaattagccaaatgtggtatatggtgatgctgggattac
                     Hedgehog  ======================================================================
                   Guinea pig  ======================================================================
                         Pika  ======================================================================
                       Rabbit  ======================================================================
                   Coelacanth  ======================================================================
                        Shrew  ======================================================================
               Golden hamster  ======================================================================
             Brush-tailed rat  ======================================================================
                 Atlantic cod  ======================================================================
                       Gibbon  ======================================================================
                  Spotted gar  ======================================================================
                  Stickleback  ======================================================================
           Southern platyfish  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                         Fugu  ======================================================================
                    Tetraodon  ======================================================================
                      Chicken  ======================================================================
                 Mallard duck  ======================================================================
           Tibetan ground jay  ======================================================================
                  Zebra finch  ======================================================================
                       Medaka  ======================================================================
          Pundamilia nyererei  ======================================================================
                  Zebra mbuna  ======================================================================
        Burton's mouthbreeder  ======================================================================
          Princess of Burundi  ======================================================================
                 Nile tilapia  ======================================================================
               Painted turtle  ======================================================================
              Green seaturtle  ======================================================================
           American alligator  ======================================================================
                Scarlet macaw  ======================================================================
                      Opossum  ======================================================================
                   Chinchilla  ======================================================================
               Naked mole-rat  ======================================================================
       Lesser Egyptian jerboa  ======================================================================
                  Rock pigeon  ======================================================================
          Collared flycatcher  ======================================================================
          Medium ground finch  ======================================================================
                       Lizard  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
             Cape golden mole  ======================================================================
           Chinese tree shrew  ======================================================================
          Cape elephant shrew  ======================================================================
                     Platypus  ======================================================================
                      Manatee  ======================================================================
              Chinese hamster  ======================================================================
                 Prairie vole  ======================================================================
                     Aardvark  ======================================================================
                     Elephant  ======================================================================
                       Tenrec  ======================================================================
                          Cat  ======================================================================
                      Megabat  ======================================================================
                     Bushbaby  ======================================================================
                          Pig  ======================================================================
     Chinese softshell turtle  ======================================================================
                      Ferret   ======================================================================
                      Dolphin  ======================================================================
                          Rat  ======================================================================
                        Mouse  ======================================================================
                        Panda  ======================================================================
                Domestic goat  ======================================================================
                        Sheep  ======================================================================
             Tibetan antelope  ======================================================================
              Star-nosed mole  ======================================================================
               Bactrian camel  ======================================================================
                       Alpaca  ======================================================================
               Pacific walrus  ======================================================================
             Black flying-fox  ======================================================================
             White rhinoceros  ======================================================================
                        Horse  ======================================================================
                     Squirrel  ======================================================================
                    Armadillo  ======================================================================
                 Weddell seal  ======================================================================
         David's myotis (bat)  ======================================================================
                Big brown bat  ======================================================================
             Little brown bat  ======================================================================
                     Marmoset  ======================================================================
                          Dog  ======================================================================
                          Cow  ======================================================================
                 Killer whale  ======================================================================

                        Human  agac
                        Chimp  agac
                      Gorilla  aggc
                    Orangutan  aggc
                       Rhesus  aggc
          Crab-eating macaque  aggc
                       Baboon  aggc
                 Green monkey  atgc
                     Hedgehog  ====
                   Guinea pig  ====
                         Pika  ====
                       Rabbit  ====
                   Coelacanth  ====
                        Shrew  ====
               Golden hamster  ====
             Brush-tailed rat  ====
                 Atlantic cod  ====
                       Gibbon  ====
                  Spotted gar  ====
                  Stickleback  ====
           Southern platyfish  ====
       Yellowbelly pufferfish  ====
                         Fugu  ====
                    Tetraodon  ====
                      Chicken  ====
                 Mallard duck  ====
           Tibetan ground jay  ====
                  Zebra finch  ====
                       Medaka  ====
          Pundamilia nyererei  ====
                  Zebra mbuna  ====
        Burton's mouthbreeder  ====
          Princess of Burundi  ====
                 Nile tilapia  ====
               Painted turtle  ====
              Green seaturtle  ====
           American alligator  ====
                Scarlet macaw  ====
                      Opossum  ====
                   Chinchilla  ====
               Naked mole-rat  ====
       Lesser Egyptian jerboa  ====
                  Rock pigeon  ====
          Collared flycatcher  ====
          Medium ground finch  ====
                       Lizard  ====
             Peregrine falcon  ====
                 Saker falcon  ====
             Cape golden mole  ====
           Chinese tree shrew  ====
          Cape elephant shrew  ====
                     Platypus  ====
                      Manatee  ====
              Chinese hamster  ====
                 Prairie vole  ====
                     Aardvark  ====
                     Elephant  ====
                       Tenrec  ====
                          Cat  ====
                      Megabat  ====
                     Bushbaby  ====
                          Pig  ====
     Chinese softshell turtle  ====
                      Ferret   ====
                      Dolphin  ====
                          Rat  ====
                        Mouse  ====
                        Panda  ====
                Domestic goat  ====
                        Sheep  ====
             Tibetan antelope  ====
              Star-nosed mole  ====
               Bactrian camel  ====
                       Alpaca  ====
               Pacific walrus  ====
             Black flying-fox  ====
             White rhinoceros  ====
                        Horse  ====
                     Squirrel  ====
                    Armadillo  ====
                 Weddell seal  ====
         David's myotis (bat)  ====
                Big brown bat  ====
             Little brown bat  ====
                     Marmoset  ====
                          Dog  ====
                          Cow  ====
                 Killer whale  ====

Alignment block 11 of 641 in window, 56695516 - 56695535, 20 bps 
B D                     Human  atgagtcactgtgcctggcc
B D                     Chimp  atgagtcactgtgcctggcc
B D                   Gorilla  atgagtcactgtacctggcc
B D                 Orangutan  atgagtcactgtgcctggcc
B D                    Rhesus  atgagttactgtgcatggcc
B D       Crab-eating macaque  atgagttactgtgcatggcc
B D                    Baboon  ttgagttactgtgcatggcc
B D              Green monkey  atgagttactgtgcatggcc
B D                     Horse  atgctttactgtgactgg--
B D                  Hedgehog  ====================
B D                Guinea pig  ====================
B D                      Pika  ====================
B D                    Rabbit  ====================
B D                Coelacanth  ====================
B D                     Shrew  ====================
              Golden hamster  ====================
            Brush-tailed rat  ====================
B D              Atlantic cod  ====================
B D                    Gibbon  ====================
                 Spotted gar  ====================
B D               Stickleback  ====================
          Southern platyfish  ====================
      Yellowbelly pufferfish  ====================
B D                      Fugu  ====================
B D                 Tetraodon  ====================
B D                   Chicken  ====================
  D              Mallard duck  ====================
          Tibetan ground jay  ====================
B D               Zebra finch  ====================
B D                    Medaka  ====================
         Pundamilia nyererei  ====================
                 Zebra mbuna  ====================
       Burton's mouthbreeder  ====================
         Princess of Burundi  ====================
B D              Nile tilapia  ====================
  D            Painted turtle  ====================
  D           Green seaturtle  ====================
B D        American alligator  ====================
  D             Scarlet macaw  ====================
B D                   Opossum  ====================
                  Chinchilla  ====================
B D            Naked mole-rat  ====================
      Lesser Egyptian jerboa  ====================
  D               Rock pigeon  ====================
  D       Collared flycatcher  ====================
B D       Medium ground finch  ====================
B D                    Lizard  ====================
  D          Peregrine falcon  ====================
  D              Saker falcon  ====================
            Cape golden mole  ====================
          Chinese tree shrew  ====================
         Cape elephant shrew  ====================
B D                  Platypus  ====================
B D                   Manatee  ====================
B D           Chinese hamster  ====================
                Prairie vole  ====================
                    Aardvark  ====================
B D                  Elephant  ====================
B D                    Tenrec  ====================
B D                       Cat  ====================
B D                   Megabat  ====================
B D                  Bushbaby  ====================
B D                       Pig  ====================
  D  Chinese softshell turtle  ====================
B D                   Ferret   ====================
B D                   Dolphin  ====================
B D                       Rat  ====================
B D                     Mouse  ====================
B D                     Panda  ====================
               Domestic goat  ====================
B D                     Sheep  ====================
            Tibetan antelope  ====================
             Star-nosed mole  ====================
              Bactrian camel  ====================
B D                    Alpaca  ====================
              Pacific walrus  ====================
            Black flying-fox  ====================
B D          White rhinoceros  ====================
B D                  Squirrel  ====================
B D                 Armadillo  ====================
                Weddell seal  ====================
        David's myotis (bat)  ====================
               Big brown bat  ====================
  D          Little brown bat  ====================
B D                  Marmoset  ====================
B D                       Dog  ====================
B D                       Cow  ====================
                Killer whale  ====================

Alignment block 12 of 641 in window, 56695536 - 56695536, 1 bps 
B D                     Human  t
B D                     Chimp  t
B D                   Gorilla  t
B D                 Orangutan  t
B D                    Rhesus  t
B D       Crab-eating macaque  t
B D                    Baboon  t
B D              Green monkey  t
B D                  Squirrel  t
B D                  Hedgehog  =
B D                Guinea pig  =
B D                      Pika  =
B D                    Rabbit  =
B D                Coelacanth  =
B D                     Shrew  =
              Golden hamster  =
            Brush-tailed rat  =
B D              Atlantic cod  =
B D                    Gibbon  =
                 Spotted gar  =
B D               Stickleback  =
          Southern platyfish  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                 Tetraodon  =
B D                   Chicken  =
  D              Mallard duck  =
          Tibetan ground jay  =
B D               Zebra finch  =
B D                    Medaka  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D              Nile tilapia  =
  D            Painted turtle  =
  D           Green seaturtle  =
B D        American alligator  =
  D             Scarlet macaw  =
B D                   Opossum  =
                  Chinchilla  =
B D            Naked mole-rat  =
      Lesser Egyptian jerboa  =
  D               Rock pigeon  =
  D       Collared flycatcher  =
B D       Medium ground finch  =
B D                    Lizard  =
  D          Peregrine falcon  =
  D              Saker falcon  =
            Cape golden mole  =
          Chinese tree shrew  =
         Cape elephant shrew  =
B D                  Platypus  =
B D                   Manatee  =
B D           Chinese hamster  =
                Prairie vole  =
                    Aardvark  =
B D                  Elephant  =
B D                    Tenrec  =
B D                       Cat  =
B D                   Megabat  =
B D                  Bushbaby  =
B D                       Pig  =
  D  Chinese softshell turtle  =
B D                   Ferret   =
B D                   Dolphin  =
B D                       Rat  =
B D                     Mouse  =
B D                     Panda  =
               Domestic goat  =
B D                     Sheep  =
            Tibetan antelope  =
             Star-nosed mole  =
              Bactrian camel  =
B D                    Alpaca  =
              Pacific walrus  =
            Black flying-fox  =
B D          White rhinoceros  =
B D                     Horse  -
B D                 Armadillo  =
                Weddell seal  =
        David's myotis (bat)  =
               Big brown bat  =
  D          Little brown bat  =
B D                  Marmoset  =
B D                       Dog  =
B D                       Cow  =
                Killer whale  =

Alignment block 13 of 641 in window, 56695537 - 56695537, 1 bps 
B D                     Human  g
B D                     Chimp  g
B D                   Gorilla  g
B D                 Orangutan  a
B D                    Rhesus  a
B D       Crab-eating macaque  a
B D                    Baboon  a
B D              Green monkey  a
B D                  Squirrel  g
B D                    Alpaca  g
               Bactrian camel  g
B D          White rhinoceros  g
B D                       Dog  g
B D                   Manatee  g
B D                  Hedgehog  =
B D                Guinea pig  =
B D                      Pika  =
B D                    Rabbit  =
B D                Coelacanth  =
B D                     Shrew  =
              Golden hamster  =
            Brush-tailed rat  =
B D              Atlantic cod  =
B D                    Gibbon  =
                 Spotted gar  =
B D               Stickleback  =
          Southern platyfish  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                 Tetraodon  =
B D                   Chicken  =
  D              Mallard duck  =
          Tibetan ground jay  =
B D               Zebra finch  =
B D                    Medaka  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D              Nile tilapia  =
  D            Painted turtle  =
  D           Green seaturtle  =
B D        American alligator  =
  D             Scarlet macaw  =
B D                   Opossum  =
                  Chinchilla  =
B D            Naked mole-rat  =
      Lesser Egyptian jerboa  =
  D               Rock pigeon  =
  D       Collared flycatcher  =
B D       Medium ground finch  =
B D                    Lizard  =
  D          Peregrine falcon  =
  D              Saker falcon  =
            Cape golden mole  =
          Chinese tree shrew  =
         Cape elephant shrew  =
B D                  Platypus  =
B D           Chinese hamster  =
                Prairie vole  =
                    Aardvark  =
B D                  Elephant  =
B D                    Tenrec  =
B D                       Cat  =
B D                   Megabat  =
B D                  Bushbaby  =
B D                       Pig  =
  D  Chinese softshell turtle  =
B D                   Ferret   =
B D                   Dolphin  =
B D                       Rat  =
B D                     Mouse  =
B D                     Panda  =
               Domestic goat  =
B D                     Sheep  =
            Tibetan antelope  =
             Star-nosed mole  =
              Pacific walrus  =
            Black flying-fox  =
B D                     Horse  -
B D                 Armadillo  =
                Weddell seal  =
        David's myotis (bat)  =
               Big brown bat  =
  D          Little brown bat  =
B D                  Marmoset  =
B D                       Cow  =
                Killer whale  =

Alignment block 14 of 641 in window, 56695538 - 56695542, 5 bps 
B D                     Human  gtgga
B D                     Chimp  gtgga
B D                   Gorilla  gtgga
B D                 Orangutan  gtgga
B D                    Rhesus  gtgga
B D       Crab-eating macaque  gtgga
B D                    Baboon  ctgaa
B D              Green monkey  gtgga
B D                  Squirrel  gtgga
B D                       Pig  gtgaa
B D                    Alpaca  atgga
               Bactrian camel  atgga
B D                   Dolphin  gtgga
                 Killer whale  gtgga
             Tibetan antelope  gtgga
B D                     Sheep  gtgga
                Domestic goat  gtgga
B D                     Horse  ----a
B D          White rhinoceros  gtgga
B D                       Dog  gtaca
               Pacific walrus  gtgca
                 Weddell seal  gtgca
B D                  Elephant  gtgga
B D                   Manatee  gtgga
B D                  Hedgehog  =====
B D                Guinea pig  =====
B D                      Pika  =====
B D                    Rabbit  =====
B D                Coelacanth  =====
B D                     Shrew  =====
              Golden hamster  =====
            Brush-tailed rat  =====
B D              Atlantic cod  =====
B D                    Gibbon  =====
                 Spotted gar  =====
B D               Stickleback  =====
          Southern platyfish  =====
      Yellowbelly pufferfish  =====
B D                      Fugu  =====
B D                 Tetraodon  =====
B D                   Chicken  =====
  D              Mallard duck  =====
          Tibetan ground jay  =====
B D               Zebra finch  =====
B D                    Medaka  =====
         Pundamilia nyererei  =====
                 Zebra mbuna  =====
       Burton's mouthbreeder  =====
         Princess of Burundi  =====
B D              Nile tilapia  =====
  D            Painted turtle  =====
  D           Green seaturtle  =====
B D        American alligator  =====
  D             Scarlet macaw  =====
B D                   Opossum  =====
                  Chinchilla  =====
B D            Naked mole-rat  =====
      Lesser Egyptian jerboa  =====
  D               Rock pigeon  =====
  D       Collared flycatcher  =====
B D       Medium ground finch  =====
B D                    Lizard  =====
  D          Peregrine falcon  =====
  D              Saker falcon  =====
            Cape golden mole  =====
          Chinese tree shrew  =====
         Cape elephant shrew  =====
B D                  Platypus  =====
B D           Chinese hamster  =====
                Prairie vole  =====
                    Aardvark  =====
B D                    Tenrec  =====
B D                       Cat  =====
B D                   Megabat  =====
B D                  Bushbaby  =====
  D  Chinese softshell turtle  =====
B D                   Ferret   =====
B D                       Rat  =====
B D                     Mouse  =====
B D                     Panda  =====
             Star-nosed mole  =====
            Black flying-fox  =====
B D                 Armadillo  =====
        David's myotis (bat)  =====
               Big brown bat  =====
  D          Little brown bat  =====
B D                  Marmoset  =====
B D                       Cow  =====

Alignment block 15 of 641 in window, 56695543 - 56695550, 8 bps 
B D                     Human  cacatgtc
B D                     Chimp  cacatttc
B D                   Gorilla  cacatttc
B D                 Orangutan  cacatttc
B D                    Rhesus  cacatttc
B D       Crab-eating macaque  cacatttc
B D                    Baboon  cacttttc
B D              Green monkey  cacatttc
B D                  Squirrel  taaattcc
B D                       Pig  caagtttc
B D                    Alpaca  caagtttc
               Bactrian camel  caagtttc
B D                   Dolphin  caagcttc
                 Killer whale  caagcttc
             Tibetan antelope  caagcttc
B D                     Sheep  caagcttc
                Domestic goat  caagcttc
B D                     Horse  caagtttc
B D          White rhinoceros  taattttc
B D                       Dog  caagtttc
               Pacific walrus  caagtttc
                 Weddell seal  caagtttc
             Black flying-fox  caaatttc
B D                   Megabat  caaatttc
B D                  Elephant  caagttcc
B D                   Manatee  caagtctt
B D                  Hedgehog  ========
B D                Guinea pig  ========
B D                      Pika  ========
B D                    Rabbit  ========
B D                Coelacanth  ========
B D                     Shrew  ========
              Golden hamster  ========
            Brush-tailed rat  ========
B D              Atlantic cod  ========
B D                    Gibbon  ========
                 Spotted gar  ========
B D               Stickleback  ========
          Southern platyfish  ========
      Yellowbelly pufferfish  ========
B D                      Fugu  ========
B D                 Tetraodon  ========
B D                   Chicken  ========
  D              Mallard duck  ========
          Tibetan ground jay  ========
B D               Zebra finch  ========
B D                    Medaka  ========
         Pundamilia nyererei  ========
                 Zebra mbuna  ========
       Burton's mouthbreeder  ========
         Princess of Burundi  ========
B D              Nile tilapia  ========
  D            Painted turtle  ========
  D           Green seaturtle  ========
B D        American alligator  ========
  D             Scarlet macaw  ========
B D                   Opossum  ========
                  Chinchilla  ========
B D            Naked mole-rat  ========
      Lesser Egyptian jerboa  ========
  D               Rock pigeon  ========
  D       Collared flycatcher  ========
B D       Medium ground finch  ========
B D                    Lizard  ========
  D          Peregrine falcon  ========
  D              Saker falcon  ========
            Cape golden mole  ========
          Chinese tree shrew  ========
         Cape elephant shrew  ========
B D                  Platypus  ========
B D           Chinese hamster  ========
                Prairie vole  ========
                    Aardvark  ========
B D                    Tenrec  ========
B D                       Cat  ========
B D                  Bushbaby  ========
  D  Chinese softshell turtle  ========
B D                   Ferret   ========
B D                       Rat  ========
B D                     Mouse  ========
B D                     Panda  ========
             Star-nosed mole  ========
B D                 Armadillo  ========
        David's myotis (bat)  ========
               Big brown bat  ========
  D          Little brown bat  ========
B D                  Marmoset  ========
B D                       Cow  ========

Alignment block 16 of 641 in window, 56695551 - 56695565, 15 bps 
B D                     Human  ttgagtgagaccact
B D                     Chimp  ttgagtgagaccact
B D                   Gorilla  ttgagtgagaccact
B D                 Orangutan  ttgagtgagagcact
B D                    Rhesus  ttgagtgagagcact
B D       Crab-eating macaque  ttgagtgagagcact
B D                    Baboon  ttgattgatagcact
B D              Green monkey  ttgagtgagagcact
B D                  Squirrel  ttgaatgtgagaact
B D                       Pig  ttaagtatag-----
B D                    Alpaca  ttgactatagggact
               Bactrian camel  ttgactatagggact
B D                   Dolphin  ttgcgtataggtact
                 Killer whale  ttgcgtataggtact
             Tibetan antelope  ttgactacagggact
B D                     Sheep  ttgactacagggact
                Domestic goat  ttgactgcagggact
B D                     Horse  ttgagtgtacaaact
B D          White rhinoceros  ttgagtatagggact
B D                       Dog  ttgaat---------
               Pacific walrus  ttgagtg--------
                 Weddell seal  ttgagtg--------
             Black flying-fox  ttgagtatagggact
B D                   Megabat  ttgagtatagggact
         David's myotis (bat)  tttaat---aagact
  D          Little brown bat  tttaat---gagact
B D                  Elephant  ctgagtatagggact
B D                   Manatee  ctgagtgtagggact
B D                  Hedgehog  ===============
B D                Guinea pig  ===============
B D                      Pika  ===============
B D                    Rabbit  ===============
B D                Coelacanth  ===============
B D                     Shrew  ===============
              Golden hamster  ===============
            Brush-tailed rat  ===============
B D              Atlantic cod  ===============
B D                    Gibbon  ===============
                 Spotted gar  ===============
B D               Stickleback  ===============
          Southern platyfish  ===============
      Yellowbelly pufferfish  ===============
B D                      Fugu  ===============
B D                 Tetraodon  ===============
B D                   Chicken  ===============
  D              Mallard duck  ===============
          Tibetan ground jay  ===============
B D               Zebra finch  ===============
B D                    Medaka  ===============
         Pundamilia nyererei  ===============
                 Zebra mbuna  ===============
       Burton's mouthbreeder  ===============
         Princess of Burundi  ===============
B D              Nile tilapia  ===============
  D            Painted turtle  ===============
  D           Green seaturtle  ===============
B D        American alligator  ===============
  D             Scarlet macaw  ===============
B D                   Opossum  ===============
                  Chinchilla  ===============
B D            Naked mole-rat  ===============
      Lesser Egyptian jerboa  ===============
  D               Rock pigeon  ===============
  D       Collared flycatcher  ===============
B D       Medium ground finch  ===============
B D                    Lizard  ===============
  D          Peregrine falcon  ===============
  D              Saker falcon  ===============
            Cape golden mole  ===============
          Chinese tree shrew  ===============
         Cape elephant shrew  ===============
B D                  Platypus  ===============
B D           Chinese hamster  ===============
                Prairie vole  ===============
                    Aardvark  ===============
B D                    Tenrec  ===============
B D                       Cat  ===============
B D                  Bushbaby  ===============
  D  Chinese softshell turtle  ===============
B D                   Ferret   ===============
B D                       Rat  ===============
B D                     Mouse  ===============
B D                     Panda  ===============
             Star-nosed mole  ===============
B D                 Armadillo  ===============
               Big brown bat  ===============
B D                  Marmoset  ===============
B D                       Cow  ===============

Alignment block 17 of 641 in window, 56695566 - 56695577, 12 bps 
B D                     Human  gccgt--catgctt
B D                     Chimp  gccgt--catgctt
B D                   Gorilla  gccgt--catgctt
B D                 Orangutan  gctgt--catactt
B D                    Rhesus  gctgt--catactt
B D       Crab-eating macaque  gctgt--catactt
B D                    Baboon  gctgt--catactt
B D              Green monkey  gctgt--catactt
B D                  Squirrel  gacgt--tatgctt
B D                       Pig  ggtgt--catattt
B D                    Alpaca  ggtgttatatattt
               Bactrian camel  ggtgt--tatattt
B D                   Dolphin  ggtgt--catattt
                 Killer whale  ggtgt--catattt
             Tibetan antelope  ggtgt--catattt
B D                     Sheep  ggtgt--catattt
                Domestic goat  ggtgt--catattt
B D                     Horse  ggtat--catattt
B D          White rhinoceros  ggtat--catattt
B D                       Dog  ----t--catattt
               Pacific walrus  ----t--catattt
                 Weddell seal  ----t--catattt
             Black flying-fox  ggtgt--catattt
B D                   Megabat  ggtgt--catattt
         David's myotis (bat)  aatgc--tatagtg
  D          Little brown bat  aatgc--tatagtg
B D                  Elephant  agtgt--tatattt
B D                   Manatee  ggcgt--tatgttt
                     Aardvark  ---gc--tg---tc
B D                  Hedgehog  ==============
B D                Guinea pig  ==============
B D                      Pika  ==============
B D                    Rabbit  ==============
B D                Coelacanth  ==============
B D                     Shrew  ==============
              Golden hamster  ==============
            Brush-tailed rat  ==============
B D              Atlantic cod  ==============
B D                    Gibbon  ==============
                 Spotted gar  ==============
B D               Stickleback  ==============
          Southern platyfish  ==============
      Yellowbelly pufferfish  ==============
B D                      Fugu  ==============
B D                 Tetraodon  ==============
B D                   Chicken  ==============
  D              Mallard duck  ==============
          Tibetan ground jay  ==============
B D               Zebra finch  ==============
B D                    Medaka  ==============
         Pundamilia nyererei  ==============
                 Zebra mbuna  ==============
       Burton's mouthbreeder  ==============
         Princess of Burundi  ==============
B D              Nile tilapia  ==============
  D            Painted turtle  ==============
  D           Green seaturtle  ==============
B D        American alligator  ==============
  D             Scarlet macaw  ==============
B D                   Opossum  ==============
                  Chinchilla  ==============
B D            Naked mole-rat  ==============
      Lesser Egyptian jerboa  ==============
  D               Rock pigeon  ==============
  D       Collared flycatcher  ==============
B D       Medium ground finch  ==============
B D                    Lizard  ==============
  D          Peregrine falcon  ==============
  D              Saker falcon  ==============
            Cape golden mole  ==============
          Chinese tree shrew  ==============
         Cape elephant shrew  ==============
B D                  Platypus  ==============
B D           Chinese hamster  ==============
                Prairie vole  ==============
B D                    Tenrec  ==============
B D                       Cat  ==============
B D                  Bushbaby  ==============
  D  Chinese softshell turtle  ==============
B D                   Ferret   ==============
B D                       Rat  ==============
B D                     Mouse  ==============
B D                     Panda  ==============
             Star-nosed mole  ==============
B D                 Armadillo  ==============
               Big brown bat  ==============
B D                  Marmoset  ==============
B D                       Cow  ==============

Inserts between block 17 and 18 in window
B D                 Elephant 4bp
B D                  Manatee 4bp
                    Aardvark 4bp

Alignment block 18 of 641 in window, 56695578 - 56695585, 8 bps 
B D                     Human  t-tc-tc--------------------act
B D                     Chimp  t-tc-tc--------------------act
B D                   Gorilla  t-tc-tc--------------------act
B D                 Orangutan  t-tc-tc--------------------act
B D                    Rhesus  t-tc-tc--------------------act
B D       Crab-eating macaque  t-tc-tc--------------------act
B D                    Baboon  t-tc-tc--------------------act
B D              Green monkey  t-tc-tc--------------------act
B D                  Squirrel  tata-tc--------------------att
B D                       Pig  t-tt-------------------------t
B D                    Alpaca  g-tcttt--------------------tgt
               Bactrian camel  g-tcttt--------------------tgt
B D                   Dolphin  g-tt-------------------------t
                 Killer whale  g-tt-------------------------t
             Tibetan antelope  g-tc-tt--------------------tgt
B D                     Sheep  g-tc-tt--------------------tgt
                Domestic goat  g-tc-tt--------------------tgt
B D                     Horse  g-tc--------------------------
B D          White rhinoceros  g-tcttt--------------------tgt
B D                       Dog  g-tctct--------------------tgt
               Pacific walrus  g-tcttt--------------------tgt
                 Weddell seal  g-ccttt--------------------tgt
             Black flying-fox  c-tctt---------------------tat
B D                   Megabat  c-tctt---------------------tat
         David's myotis (bat)  t-gtctggcactagaaacaaagacaaatat
  D          Little brown bat  t-gtctggcactagaaacaaagacaaatat
B D                  Elephant  --------------------------ttgt
B D                   Manatee  --------------------------ttgt
                     Aardvark  --------------------------gtct
B D                 Armadillo  --------------------------ttgt
B D                  Hedgehog  ==============================
B D                Guinea pig  ==============================
B D                      Pika  ==============================
B D                    Rabbit  ==============================
B D                Coelacanth  ==============================
B D                     Shrew  ==============================
              Golden hamster  ==============================
            Brush-tailed rat  ==============================
B D              Atlantic cod  ==============================
B D                    Gibbon  ==============================
                 Spotted gar  ==============================
B D               Stickleback  ==============================
          Southern platyfish  ==============================
      Yellowbelly pufferfish  ==============================
B D                      Fugu  ==============================
B D                 Tetraodon  ==============================
B D                   Chicken  ==============================
  D              Mallard duck  ==============================
          Tibetan ground jay  ==============================
B D               Zebra finch  ==============================
B D                    Medaka  ==============================
         Pundamilia nyererei  ==============================
                 Zebra mbuna  ==============================
       Burton's mouthbreeder  ==============================
         Princess of Burundi  ==============================
B D              Nile tilapia  ==============================
  D            Painted turtle  ==============================
  D           Green seaturtle  ==============================
B D        American alligator  ==============================
  D             Scarlet macaw  ==============================
B D                   Opossum  ==============================
                  Chinchilla  ==============================
B D            Naked mole-rat  ==============================
      Lesser Egyptian jerboa  ==============================
  D               Rock pigeon  ==============================
  D       Collared flycatcher  ==============================
B D       Medium ground finch  ==============================
B D                    Lizard  ==============================
  D          Peregrine falcon  ==============================
  D              Saker falcon  ==============================
            Cape golden mole  ==============================
          Chinese tree shrew  ==============================
         Cape elephant shrew  ==============================
B D                  Platypus  ==============================
B D           Chinese hamster  ==============================
                Prairie vole  ==============================
B D                    Tenrec  ==============================
B D                       Cat  ==============================
B D                  Bushbaby  ==============================
  D  Chinese softshell turtle  ==============================
B D                   Ferret   ==============================
B D                       Rat  ==============================
B D                     Mouse  ==============================
B D                     Panda  ==============================
             Star-nosed mole  ==============================
               Big brown bat  ==============================
B D                  Marmoset  ==============================
B D                       Cow  ==============================

Inserts between block 18 and 19 in window
                    Aardvark 8bp

Alignment block 19 of 641 in window, 56695586 - 56695595, 10 bps 
B D                     Human  a-ttctga--gtc
B D                     Chimp  a-ttctga--gtc
B D                   Gorilla  a-ttctga--gtc
B D                 Orangutan  a-ttctga--gtc
B D                    Rhesus  a-ttctca--gtc
B D       Crab-eating macaque  a-ttctca--gtc
B D                    Baboon  a-ttctca--gtc
B D              Green monkey  a-ttctca--gtc
B D                  Squirrel  a-tattcactatg
B D                       Pig  g-tttcca--gta
B D                    Alpaca  g-tttcca--gta
               Bactrian camel  g-tttcca--gta
B D                   Dolphin  g-tttcca--gtg
                 Killer whale  g-tttcca--gtg
             Tibetan antelope  g-tttcca--gtg
B D                     Sheep  g-tttcca--gtg
                Domestic goat  g-tttcta--gtg
B D                     Horse  --tttcca--gtg
B D          White rhinoceros  g-tttcca--gag
B D                       Dog  g-tttcta--atg
               Pacific walrus  g-tttcta--atg
             Black flying-fox  g-tttcca--agg
B D                   Megabat  g-tttcca--agg
         David's myotis (bat)  gatttcca--gtg
  D          Little brown bat  gatttcca--gtg
B D                  Elephant  a-ttcatg--gtg
B D                   Manatee  a-ttcata--gtg
B D                    Tenrec  a-ctcaca--gtg
                     Aardvark  -----aca--tca
B D                 Armadillo  a-ttccca--ggg
B D                  Hedgehog  =============
B D                Guinea pig  =============
B D                      Pika  =============
B D                    Rabbit  =============
B D                Coelacanth  =============
B D                     Shrew  =============
              Golden hamster  =============
            Brush-tailed rat  =============
B D              Atlantic cod  =============
B D                    Gibbon  =============
                 Spotted gar  =============
B D               Stickleback  =============
          Southern platyfish  =============
      Yellowbelly pufferfish  =============
B D                      Fugu  =============
B D                 Tetraodon  =============
B D                   Chicken  =============
  D              Mallard duck  =============
          Tibetan ground jay  =============
B D               Zebra finch  =============
B D                    Medaka  =============
         Pundamilia nyererei  =============
                 Zebra mbuna  =============
       Burton's mouthbreeder  =============
         Princess of Burundi  =============
B D              Nile tilapia  =============
  D            Painted turtle  =============
  D           Green seaturtle  =============
B D        American alligator  =============
  D             Scarlet macaw  =============
B D                   Opossum  =============
                  Chinchilla  =============
B D            Naked mole-rat  =============
      Lesser Egyptian jerboa  =============
  D               Rock pigeon  =============
  D       Collared flycatcher  =============
B D       Medium ground finch  =============
B D                    Lizard  =============
  D          Peregrine falcon  =============
  D              Saker falcon  =============
            Cape golden mole  =============
          Chinese tree shrew  =============
         Cape elephant shrew  =============
B D                  Platypus  =============
B D           Chinese hamster  =============
                Prairie vole  =============
B D                       Cat  =============
B D                  Bushbaby  =============
  D  Chinese softshell turtle  =============
B D                   Ferret   =============
B D                       Rat  =============
B D                     Mouse  =============
B D                     Panda  =============
             Star-nosed mole  =============
                Weddell seal  -------------
               Big brown bat  =============
B D                  Marmoset  =============
B D                       Cow  =============

Alignment block 20 of 641 in window, 56695596 - 56695601, 6 bps 
B D                     Human  cctg---------gc
B D                     Chimp  cctg---------gc
B D                   Gorilla  cctg---------gc
B D                 Orangutan  cctg---------gc
B D                    Rhesus  cctg---------gc
B D       Crab-eating macaque  cctg---------gc
B D                    Baboon  ccta---------gc
B D              Green monkey  cctg---------gc
B D                  Squirrel  cctc---------gc
B D                       Pig  ccag---------aa
B D                    Alpaca  gcag---------ac
               Bactrian camel  gcag---------ac
B D                   Dolphin  ccag---------ac
                 Killer whale  ccag---------ac
             Tibetan antelope  ccag---------ac
B D                     Sheep  ccag---------ac
                Domestic goat  ccag---------ac
B D                     Horse  ccag---------ac
B D          White rhinoceros  ccag---------ac
B D                       Dog  ccag---------ac
               Pacific walrus  cc-----------ag
                 Weddell seal  --------------c
             Black flying-fox  ccag---------ac
B D                   Megabat  ccag---------ac
         David's myotis (bat)  ccag---------ac
  D          Little brown bat  ccag---------ac
B D                     Shrew  ccag---------gc
B D                  Elephant  ccaa---------gc
B D                   Manatee  ccag---------gc
B D                    Tenrec  ccag---------gc
                     Aardvark  ccagagctccttagc
B D                 Armadillo  tcag---------gc
B D                  Hedgehog  ===============
B D                Guinea pig  ===============
B D                      Pika  ===============
B D                    Rabbit  ===============
B D                Coelacanth  ===============
              Golden hamster  ===============
            Brush-tailed rat  ===============
B D              Atlantic cod  ===============
B D                    Gibbon  ===============
                 Spotted gar  ===============
B D               Stickleback  ===============
          Southern platyfish  ===============
      Yellowbelly pufferfish  ===============
B D                      Fugu  ===============
B D                 Tetraodon  ===============
B D                   Chicken  ===============
  D              Mallard duck  ===============
          Tibetan ground jay  ===============
B D               Zebra finch  ===============
B D                    Medaka  ===============
         Pundamilia nyererei  ===============
                 Zebra mbuna  ===============
       Burton's mouthbreeder  ===============
         Princess of Burundi  ===============
B D              Nile tilapia  ===============
  D            Painted turtle  ===============
  D           Green seaturtle  ===============
B D        American alligator  ===============
  D             Scarlet macaw  ===============
B D                   Opossum  ===============
                  Chinchilla  ===============
B D            Naked mole-rat  ===============
      Lesser Egyptian jerboa  ===============
  D               Rock pigeon  ===============
  D       Collared flycatcher  ===============
B D       Medium ground finch  ===============
B D                    Lizard  ===============
  D          Peregrine falcon  ===============
  D              Saker falcon  ===============
            Cape golden mole  ===============
          Chinese tree shrew  ===============
         Cape elephant shrew  ===============
B D                  Platypus  ===============
B D           Chinese hamster  ===============
                Prairie vole  ===============
B D                       Cat  ===============
B D                  Bushbaby  ===============
  D  Chinese softshell turtle  ===============
B D                   Ferret   ===============
B D                       Rat  ===============
B D                     Mouse  ===============
B D                     Panda  ===============
             Star-nosed mole  ===============
               Big brown bat  ===============
B D                  Marmoset  ===============
B D                       Cow  ===============

Alignment block 21 of 641 in window, 56695602 - 56695618, 17 bps 
B D                     Human  acatagtagatgctc--aa
B D                     Chimp  acatagtagatgctc--aa
B D                   Gorilla  acatagtagatgctc--aa
B D                 Orangutan  acgtagtagatgctc--aa
B D                    Rhesus  acatagtagttgctc--aa
B D       Crab-eating macaque  acatagtagttgctc--aa
B D                    Baboon  acatagtagttgctc--aa
B D              Green monkey  acgtagtagttgctc--aa
B D                  Squirrel  tcatagtatgtttta--aa
B D                       Pig  acataataggtactc--aa
B D                    Alpaca  acataataggtgctc--aa
               Bactrian camel  acataataggttctc--aa
B D                   Dolphin  acataatagatgctc--aa
                 Killer whale  acataatagatgctc--aa
             Tibetan antelope  acgtaatagatgctc--aa
B D                     Sheep  acgtaatagatgctc--aa
                Domestic goat  acgtaataggtgctc--aa
B D                     Horse  gtatagtcggtgctc--aa
B D          White rhinoceros  acatagttggtactc--aa
B D                       Dog  acatatgtgtctggc--aa
               Pacific walrus  acatatgtgtctggc--aa
                 Weddell seal  atatatgtgtctggc--aa
             Black flying-fox  acatagtagatgctcaga-
B D                   Megabat  acatagtagatgctcaga-
                Big brown bat  acacaactgatactt--a-
         David's myotis (bat)  --acaattgatgctt--a-
  D          Little brown bat  --acaattgatgctt--a-
B D                     Shrew  atatagcagatgcac--ac
B D                  Elephant  acatagtaggtgctc--ag
B D                   Manatee  acatagcaggtgctc--ag
B D                    Tenrec  atctgttaggtactc--aa
                     Aardvark  ccatagtaggtactc--aa
B D                 Armadillo  acatagtaagttctc--aa
B D                  Hedgehog  ===================
B D                Guinea pig  ===================
B D                      Pika  ===================
B D                    Rabbit  ===================
B D                Coelacanth  ===================
              Golden hamster  ===================
            Brush-tailed rat  ===================
B D              Atlantic cod  ===================
B D                    Gibbon  ===================
                 Spotted gar  ===================
B D               Stickleback  ===================
          Southern platyfish  ===================
      Yellowbelly pufferfish  ===================
B D                      Fugu  ===================
B D                 Tetraodon  ===================
B D                   Chicken  ===================
  D              Mallard duck  ===================
          Tibetan ground jay  ===================
B D               Zebra finch  ===================
B D                    Medaka  ===================
         Pundamilia nyererei  ===================
                 Zebra mbuna  ===================
       Burton's mouthbreeder  ===================
         Princess of Burundi  ===================
B D              Nile tilapia  ===================
  D            Painted turtle  ===================
  D           Green seaturtle  ===================
B D        American alligator  ===================
  D             Scarlet macaw  ===================
B D                   Opossum  ===================
                  Chinchilla  ===================
B D            Naked mole-rat  ===================
      Lesser Egyptian jerboa  ===================
  D               Rock pigeon  ===================
  D       Collared flycatcher  ===================
B D       Medium ground finch  ===================
B D                    Lizard  ===================
  D          Peregrine falcon  ===================
  D              Saker falcon  ===================
            Cape golden mole  ===================
          Chinese tree shrew  ===================
         Cape elephant shrew  ===================
B D                  Platypus  ===================
B D           Chinese hamster  ===================
                Prairie vole  ===================
B D                       Cat  ===================
B D                  Bushbaby  ===================
  D  Chinese softshell turtle  ===================
B D                   Ferret   ===================
B D                       Rat  ===================
B D                     Mouse  ===================
B D                     Panda  ===================
             Star-nosed mole  ===================
B D                  Marmoset  ===================
B D                       Cow  ===================

Inserts between block 21 and 22 in window
B D                    Horse 1bp
B D         White rhinoceros 1bp
B D                      Dog 1bp
              Pacific walrus 1bp
                Weddell seal 1bp
B D                    Shrew 3bp

Alignment block 22 of 641 in window, 56695619 - 56695628, 10 bps 
B D                     Human  aaat--gtttgt
B D                     Chimp  aaat--gtttgt
B D                   Gorilla  aaat--gtttgt
B D                 Orangutan  aaat--gtttgt
B D                    Rhesus  caat--gtttgt
B D       Crab-eating macaque  caat--gtttgt
B D                    Baboon  caat--gtttgt
B D              Green monkey  caat--gtttgt
B D                  Squirrel  aaaa--atttgt
B D                       Pig  --aa--gtttgt
B D                    Alpaca  --aa--gtttgt
               Bactrian camel  --aa--gtttgt
B D                   Dolphin  --aa--gtttgt
                 Killer whale  --aa--gtttgt
             Tibetan antelope  --aa---tttgt
B D                     Sheep  --aa---tttgt
                Domestic goat  --aa---tttgt
B D                     Horse  gaat--gcttgt
B D          White rhinoceros  aaat--gtttgt
B D                       Dog  aaat--gtttgt
B D                     Panda  aaat--gtttgt
               Pacific walrus  aaat--gtttgt
                 Weddell seal  agat--gtttgt
             Black flying-fox  aaat--gtttgt
B D                   Megabat  aaat--gtttgt
                Big brown bat  aaat--gtttgt
         David's myotis (bat)  aaat--gtttgt
  D          Little brown bat  aaat--gtttgt
B D                     Shrew  aaat--atttct
B D                  Elephant  aaac--gtttgt
B D                   Manatee  aaat--gtttgt
B D                    Tenrec  aacc--gtttgt
                     Aardvark  aagt--gttcag
B D                 Armadillo  aaaaaggtttgt
B D                  Hedgehog  ============
B D                Guinea pig  ============
B D                      Pika  ============
B D                    Rabbit  ============
B D                Coelacanth  ============
              Golden hamster  ============
            Brush-tailed rat  ============
B D              Atlantic cod  ============
B D                    Gibbon  ============
                 Spotted gar  ============
B D               Stickleback  ============
          Southern platyfish  ============
      Yellowbelly pufferfish  ============
B D                      Fugu  ============
B D                 Tetraodon  ============
B D                   Chicken  ============
  D              Mallard duck  ============
          Tibetan ground jay  ============
B D               Zebra finch  ============
B D                    Medaka  ============
         Pundamilia nyererei  ============
                 Zebra mbuna  ============
       Burton's mouthbreeder  ============
         Princess of Burundi  ============
B D              Nile tilapia  ============
  D            Painted turtle  ============
  D           Green seaturtle  ============
B D        American alligator  ============
  D             Scarlet macaw  ============
B D                   Opossum  ============
                  Chinchilla  ============
B D            Naked mole-rat  ============
      Lesser Egyptian jerboa  ============
  D               Rock pigeon  ============
  D       Collared flycatcher  ============
B D       Medium ground finch  ============
B D                    Lizard  ============
  D          Peregrine falcon  ============
  D              Saker falcon  ============
            Cape golden mole  ============
          Chinese tree shrew  ============
         Cape elephant shrew  ============
B D                  Platypus  ============
B D           Chinese hamster  ============
                Prairie vole  ============
B D                       Cat  ============
B D                  Bushbaby  ============
  D  Chinese softshell turtle  ============
B D                   Ferret   ============
B D                       Rat  ============
B D                     Mouse  ============
             Star-nosed mole  ============
B D                  Marmoset  ============
B D                       Cow  ============

Inserts between block 22 and 23 in window
B D                   Baboon 861bp

Alignment block 23 of 641 in window, 56695629 - 56695637, 9 bps 
B D                     Human  taaatatat
B D                     Chimp  taaatatat
B D                   Gorilla  taaatatat
B D                 Orangutan  taaatatat
B D                    Rhesus  taaatatat
B D       Crab-eating macaque  taaatatat
B D                    Baboon  taataataa
B D              Green monkey  taaatatat
B D                  Squirrel  tgattatat
B D                       Pig  gtaata---
B D                    Alpaca  ggaata---
               Bactrian camel  ggaata---
B D                   Dolphin  ggaata---
                 Killer whale  ggaata---
             Tibetan antelope  ggaata---
B D                     Sheep  ggaata---
                Domestic goat  ggaata---
B D                     Horse  ggaata---
B D          White rhinoceros  ggaata---
B D                       Dog  agaata---
B D                     Panda  ggaata---
               Pacific walrus  ggaata---
                 Weddell seal  ggaata---
             Black flying-fox  ggacta---
B D                   Megabat  ggacta---
                Big brown bat  ggaata---
         David's myotis (bat)  ggaata---
  D          Little brown bat  ggaata---
B D                     Shrew  aggcaa---
B D                  Elephant  taaatt---
B D                   Manatee  tcaatt---
B D                    Tenrec  tgagtt---
                     Aardvark  tgaatt---
B D                 Armadillo  taaata---
B D                  Hedgehog  =========
B D                Guinea pig  =========
B D                      Pika  =========
B D                    Rabbit  =========
B D                Coelacanth  =========
              Golden hamster  =========
            Brush-tailed rat  =========
B D              Atlantic cod  =========
B D                    Gibbon  =========
                 Spotted gar  =========
B D               Stickleback  =========
          Southern platyfish  =========
      Yellowbelly pufferfish  =========
B D                      Fugu  =========
B D                 Tetraodon  =========
B D                   Chicken  =========
  D              Mallard duck  =========
          Tibetan ground jay  =========
B D               Zebra finch  =========
B D                    Medaka  =========
         Pundamilia nyererei  =========
                 Zebra mbuna  =========
       Burton's mouthbreeder  =========
         Princess of Burundi  =========
B D              Nile tilapia  =========
  D            Painted turtle  =========
  D           Green seaturtle  =========
B D        American alligator  =========
  D             Scarlet macaw  =========
B D                   Opossum  =========
                  Chinchilla  =========
B D            Naked mole-rat  =========
      Lesser Egyptian jerboa  =========
  D               Rock pigeon  =========
  D       Collared flycatcher  =========
B D       Medium ground finch  =========
B D                    Lizard  =========
  D          Peregrine falcon  =========
  D              Saker falcon  =========
            Cape golden mole  =========
          Chinese tree shrew  =========
         Cape elephant shrew  =========
B D                  Platypus  =========
B D           Chinese hamster  =========
                Prairie vole  =========
B D                       Cat  =========
B D                  Bushbaby  =========
  D  Chinese softshell turtle  =========
B D                   Ferret   =========
B D                       Rat  =========
B D                     Mouse  =========
             Star-nosed mole  =========
B D                  Marmoset  =========
B D                       Cow  =========

Inserts between block 23 and 24 in window
B D                   Rhesus 326bp
B D             Green monkey 321bp

Alignment block 24 of 641 in window, 56695638 - 56695652, 15 bps 
B D                     Human  taataatttagctgt----
B D                     Chimp  taataatttagccgt----
B D                   Gorilla  taataatttagctgt----
B D                 Orangutan  taataatttagctgt----
B D                    Rhesus  taataatttagctgt----
B D       Crab-eating macaque  taataatttagctgt----
B D                    Baboon  taataatttagctgt----
B D              Green monkey  taataatttagctgt----
B D                  Squirrel  -------tttgt-------
B D                       Pig  ---taattc-gttgt----
B D                    Alpaca  ---taatat-gctgt----
               Bactrian camel  ---taatat-gctgt----
B D                   Dolphin  ---taattt-gc-------
                 Killer whale  ---taattt-gc-------
             Tibetan antelope  ---taattt-gc-------
B D                     Sheep  ---taattt-gc-------
                Domestic goat  ---taattt-gc-------
B D                     Horse  ---caattt-gctat----
B D          White rhinoceros  ---taattt-gccat----
B D                       Dog  ---taattt-accat----
B D                     Panda  ---taattt-aacat----
               Pacific walrus  ---taattc-aacat----
                 Weddell seal  ---taattc-accat----
             Black flying-fox  ---taattt-gccat----
B D                   Megabat  ---taattt-gccat----
                Big brown bat  ---taattt-gccat----
         David's myotis (bat)  ---taattt-gccat----
  D          Little brown bat  ---taattt-gccat----
B D                     Shrew  ---tagttt-actat----
B D                  Elephant  ---tgattt-gtcatctgg
B D                   Manatee  ---tgattt-gtcatctgg
B D                    Tenrec  ---tgattt-gtcatctgg
                     Aardvark  ---tcattc-gtcatctgg
B D                 Armadillo  ---taattt-gtcacttgg
B D                  Hedgehog  ===================
B D                Guinea pig  ===================
B D                      Pika  ===================
B D                    Rabbit  ===================
B D                Coelacanth  ===================
              Golden hamster  ===================
            Brush-tailed rat  ===================
B D              Atlantic cod  ===================
B D                    Gibbon  ===================
                 Spotted gar  ===================
B D               Stickleback  ===================
          Southern platyfish  ===================
      Yellowbelly pufferfish  ===================
B D                      Fugu  ===================
B D                 Tetraodon  ===================
B D                   Chicken  ===================
  D              Mallard duck  ===================
          Tibetan ground jay  ===================
B D               Zebra finch  ===================
B D                    Medaka  ===================
         Pundamilia nyererei  ===================
                 Zebra mbuna  ===================
       Burton's mouthbreeder  ===================
         Princess of Burundi  ===================
B D              Nile tilapia  ===================
  D            Painted turtle  ===================
  D           Green seaturtle  ===================
B D        American alligator  ===================
  D             Scarlet macaw  ===================
B D                   Opossum  ===================
                  Chinchilla  ===================
B D            Naked mole-rat  ===================
      Lesser Egyptian jerboa  ===================
  D               Rock pigeon  ===================
  D       Collared flycatcher  ===================
B D       Medium ground finch  ===================
B D                    Lizard  ===================
  D          Peregrine falcon  ===================
  D              Saker falcon  ===================
            Cape golden mole  ===================
          Chinese tree shrew  ===================
         Cape elephant shrew  ===================
B D                  Platypus  ===================
B D           Chinese hamster  ===================
                Prairie vole  ===================
B D                       Cat  ===================
B D                  Bushbaby  ===================
  D  Chinese softshell turtle  ===================
B D                   Ferret   ===================
B D                       Rat  ===================
B D                     Mouse  ===================
             Star-nosed mole  ===================
B D                  Marmoset  ===================
B D                       Cow  ===================

Inserts between block 24 and 25 in window
B D      Crab-eating macaque 367bp
B D                      Pig 4bp
B D                   Alpaca 4bp
              Bactrian camel 4bp
B D                    Horse 4bp
B D         White rhinoceros 4bp
B D                      Dog 4bp
B D                    Panda 4bp
              Pacific walrus 4bp
                Weddell seal 4bp
            Black flying-fox 4bp
B D                  Megabat 4bp
               Big brown bat 4bp
        David's myotis (bat) 4bp
  D         Little brown bat 4bp
B D                    Shrew 4bp

Alignment block 25 of 641 in window, 56695653 - 56695656, 4 bps 
B D                     Human  aatg
B D                     Chimp  aatg
B D                   Gorilla  aatg
B D                 Orangutan  aatg
B D                    Rhesus  aatg
B D                    Baboon  aatg
B D              Green monkey  aatg
B D                  Squirrel  attt
B D                       Pig  aatg
B D                    Alpaca  agtg
               Bactrian camel  agtg
B D                   Dolphin  --tg
                 Killer whale  --tg
             Tibetan antelope  --tg
B D                     Sheep  --tg
                Domestic goat  --tg
B D                     Horse  tgtg
B D          White rhinoceros  tgtg
B D                       Dog  agtg
B D                     Panda  agtg
               Pacific walrus  agtg
                 Weddell seal  agtg
             Black flying-fox  agtg
B D                   Megabat  agtg
                Big brown bat  agtg
         David's myotis (bat)  agtg
  D          Little brown bat  agtg
B D                     Shrew  agtg
B D                  Elephant  agta
B D                   Manatee  agta
B D                    Tenrec  agta
                     Aardvark  aata
B D                 Armadillo  aata
B D                  Hedgehog  ====
B D                Guinea pig  ====
B D                      Pika  ====
B D                    Rabbit  ====
B D                Coelacanth  ====
              Golden hamster  ====
B D       Crab-eating macaque  ====
            Brush-tailed rat  ====
B D              Atlantic cod  ====
B D                    Gibbon  ====
                 Spotted gar  ====
B D               Stickleback  ====
          Southern platyfish  ====
      Yellowbelly pufferfish  ====
B D                      Fugu  ====
B D                 Tetraodon  ====
B D                   Chicken  ====
  D              Mallard duck  ====
          Tibetan ground jay  ====
B D               Zebra finch  ====
B D                    Medaka  ====
         Pundamilia nyererei  ====
                 Zebra mbuna  ====
       Burton's mouthbreeder  ====
         Princess of Burundi  ====
B D              Nile tilapia  ====
  D            Painted turtle  ====
  D           Green seaturtle  ====
B D        American alligator  ====
  D             Scarlet macaw  ====
B D                   Opossum  ====
                  Chinchilla  ====
B D            Naked mole-rat  ====
      Lesser Egyptian jerboa  ====
  D               Rock pigeon  ====
  D       Collared flycatcher  ====
B D       Medium ground finch  ====
B D                    Lizard  ====
  D          Peregrine falcon  ====
  D              Saker falcon  ====
            Cape golden mole  ====
          Chinese tree shrew  ====
         Cape elephant shrew  ====
B D                  Platypus  ====
B D           Chinese hamster  ====
                Prairie vole  ====
B D                       Cat  ====
B D                  Bushbaby  ====
  D  Chinese softshell turtle  ====
B D                   Ferret   ====
B D                       Rat  ====
B D                     Mouse  ====
             Star-nosed mole  ====
B D                  Marmoset  ====
B D                       Cow  ====

Inserts between block 25 and 26 in window
B D                   Tenrec 2bp

Alignment block 26 of 641 in window, 56695657 - 56695745, 89 bps 
B D                     Human  gagaaaaactatg----g--acaaaccagtcatggtagtttaggcaagagattagacccag----aacta
B D                     Chimp  gagtaaaactatg----g--acaaaccagtcatggtagtttaggcaagagattagacccag----aacta
B D                   Gorilla  gagaaaaactatg----g--acaaaccagtcatggtagtttaggcaagagattagacccag----aacta
B D                 Orangutan  gagaaaaactatg----g--acaaaccagtcgtggtagtttaggcaagagattagacccag----aacta
B D                    Rhesus  gagaaaaactatg----g--acaaaccagtcatggtagtttaggcaagagattacacccag----aacta
B D                    Baboon  gagaaaaactatg----g--acaaaccagtcatggtagtttaggcaagagattagacccag----aacta
B D              Green monkey  gagaaaaactatg----g--acaaaccagtcatggtagtttaggcaagagattagacccag----aacta
B D                  Squirrel  gtgaaaaactgtgggcag--acagaccagttgtgataatttaggcaagagagtagacctaa----aacta
B D                       Pig  gaaaaaggctgca----a--aaagaccagttttggtagttaaggcaagagagtagacccag----aacta
B D                    Alpaca  gaaaaagactgca----g--acagaccagttacagtaacttaggcaagagaatagaccaag----aacta
               Bactrian camel  gaaaaagactgca----g--acagaccagttacggtaatttaggcaagagaatagaccaag----aacta
B D                   Dolphin  taaaaagactgca----g--acaggccagctatggtagtttaggcaagagagtagagccag----aacta
                 Killer whale  taaaaagactgca----g--acaggccagctatggtagtttaggcaagagagtagagccag----aacta
             Tibetan antelope  gaaaaagactaca----g--acaggccagctatggtagtttaggcaagacagtagacccag----aacta
B D                     Sheep  gaaaaagactaca----g--acaggccagctatggtagtttaggcaagagagtagacccagaactaacta
                Domestic goat  gaaaaagactaca----g--acaggtcagctatggtagtttaggcaagacagtagacccag----aacta
B D                     Horse  cagaaagactgca----g--gcagatcagttatggtagtttaggcaagagagtagacccag----aacca
B D          White rhinoceros  cggaaagactgca----g--acagatcagttatggtggtttaggcaagagagtagacccgg----aacca
B D                       Dog  gagaaagacttca----g--acagactagttatgatagtttaggcaagaggtta----------------
B D                     Panda  gagaaagactaca----g--acagaccagttaagatagtttaggcaagagagcaggcccag----aacta
               Pacific walrus  gagaaagactgca----g--acagaccagttatgatcatttaggtaagagagtaggcccag----agcta
                 Weddell seal  gagaaagactgca----g--acagaccagttatgatagtttaggtaagagagtaggcccgg----agcta
             Black flying-fox  gagaaagactgta----g--acagactagctatagtagtttaagaaagacagtagacccaa----aacta
B D                   Megabat  gagaaagactgta----g--acagactagctatagtagtttaagaaagacagtagacccaa----aacta
                Big brown bat  gagaaagactgca----g--acagaccaactatgggagtttagacaagagagtagacccag----aacta
         David's myotis (bat)  gaga----------------acagaccaactatggcagtttagacaagagagtagacccag----accta
  D          Little brown bat  gaga----------------acagaccaactatggcagtttagacaagagagtagacccag----aacta
B D                     Shrew  atgaaagactgca----g--acagaccagctacagtaacttatgcaagaaagtaaaaccag----aatca
B D                  Elephant  gagagaggctgca----gacacaaaccatttatggtagttttggcaaaagattaggcccag----aagta
B D                   Manatee  gagagaggctgca----g--acaaaccatttacagtactttaggcaaaagattagacccag----aagta
             Cape golden mole  gagagagatggca----g--acaaatcctttatggtagtttaggtaaaagattagacctaa----aactt
B D                    Tenrec  gggaccacagatg----g--acaactcattgatgggagtttaagggaaagattagaccgag----aactg
                     Aardvark  gaaagagactgca----g--acaaaccatttattgtagttgaggcaaaagattagacccag----aacta
B D                 Armadillo  gagagagaccaca----g----agaccagttagggtagtttaggcaagattttagacccag----aacta
B D                  Hedgehog  ======================================================================
B D                Guinea pig  ======================================================================
B D                      Pika  ======================================================================
B D                    Rabbit  ======================================================================
B D                Coelacanth  ======================================================================
              Golden hamster  ======================================================================
B D       Crab-eating macaque  ======================================================================
            Brush-tailed rat  ======================================================================
B D              Atlantic cod  ======================================================================
B D                    Gibbon  ======================================================================
                 Spotted gar  ======================================================================
B D               Stickleback  ======================================================================
          Southern platyfish  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                      Fugu  ======================================================================
B D                 Tetraodon  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
B D                    Medaka  ======================================================================
         Pundamilia nyererei  ======================================================================
                 Zebra mbuna  ======================================================================
       Burton's mouthbreeder  ======================================================================
         Princess of Burundi  ======================================================================
B D              Nile tilapia  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D        American alligator  ======================================================================
  D             Scarlet macaw  ======================================================================
B D                   Opossum  ======================================================================
                  Chinchilla  ======================================================================
B D            Naked mole-rat  ======================================================================
      Lesser Egyptian jerboa  ======================================================================
  D               Rock pigeon  ======================================================================
  D       Collared flycatcher  ======================================================================
B D       Medium ground finch  ======================================================================
B D                    Lizard  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
          Chinese tree shrew  ======================================================================
         Cape elephant shrew  ======================================================================
B D                  Platypus  ======================================================================
B D           Chinese hamster  ======================================================================
                Prairie vole  ======================================================================
B D                       Cat  ======================================================================
B D                  Bushbaby  ======================================================================
  D  Chinese softshell turtle  ======================================================================
B D                   Ferret   ======================================================================
B D                       Rat  ======================================================================
B D                     Mouse  ======================================================================
             Star-nosed mole  ======================================================================
B D                  Marmoset  ======================================================================
B D                       Cow  ======================================================================

                        Human  aagcagtggcagtagg-----agtgg---acagataa-
                        Chimp  aagcagtggcagtagg-----agtgg---acagataa-
                      Gorilla  aagcagtggcagtagg-----agtgg---acagataa-
                    Orangutan  aagcagtggcagtagg-----agtgg---acagataa-
                       Rhesus  aagcagtggcagtagg-----aatgg---acagataa-
                       Baboon  aagcagtggcagtagg-----aatgg---acagataa-
                 Green monkey  aagcagtggcagtagg-----aatgg---acagataa-
                     Squirrel  aagcagtggcaataga-----agtaa---aaaga-aa-
                          Pig  tagcagtaactctagg-----agtaa---agaga-aa-
                       Alpaca  aagcagtcactgtagg-----gggga---agaga-aa-
               Bactrian camel  aagcagtcactgtagg-----gggga---agaga-aa-
                      Dolphin  aagcagttgctgaagg-----gctga---agaga-aa-
                 Killer whale  aagcagttgctgaagg-----gctga---agaga-aa-
             Tibetan antelope  aaacaatcgctgagga-----attga---agaga-ag-
                        Sheep  aaacaatt-ctcagga-----attga---agaga-ag-
                Domestic goat  aaacaatcactgagga-----attga---agaga-ag-
                        Horse  aagcagtagctgtagg-----agtaa---agagg-aa-
             White rhinoceros  aaggagtagctgtagg-----agtga---agaga-aa-
                          Dog  -----------------------------gaaaa-aa-
                        Panda  aagaagtaggggtacgataccagtgaag-aaaaa-aa-
               Pacific walrus  aagcaatagctgtacg-----agtgaagaaaaaa-aa-
                 Weddell seal  aagcagtagctgtaca-----agtgaagaaaaaa-aa-
             Black flying-fox  aagcaatagctgtggg-----agtga---agaga-aa-
                      Megabat  aagcaatagctgtggg-----agtga---agaga-aa-
                Big brown bat  aaaccgtaggtgtggg-----agtaa---aaaga-aa-
         David's myotis (bat)  aaaccgtaacggtggg-----aataa---aaaga-aa-
             Little brown bat  aaaccgtaactgtggg-----agtaa---aaaga-aa-
                        Shrew  aagcagtagct----------tttga---agtga-aa-
                     Elephant  aagcagtggctgtagg-----agtag---aaaga-aa-
                      Manatee  aagcagtgtctgtagg-----agtag---aaaga-aa-
             Cape golden mole  aagcagtagctgtagt-----aatac---aaaga-aaa
                       Tenrec  aagcagcgagtgtagg-----aatgg---aaaga-aaa
                     Aardvark  aagcagtccctgtagg-----agtgg---aaaga-aa-
                    Armadillo  agacagtgactgtatt-----aatgg---agaga-aa-
                     Hedgehog  ======================================
                   Guinea pig  ======================================
                         Pika  ======================================
                       Rabbit  ======================================
                   Coelacanth  ======================================
               Golden hamster  ======================================
          Crab-eating macaque  ======================================
             Brush-tailed rat  ======================================
                 Atlantic cod  ======================================
                       Gibbon  ======================================
                  Spotted gar  ======================================
                  Stickleback  ======================================
           Southern platyfish  ======================================
       Yellowbelly pufferfish  ======================================
                         Fugu  ======================================
                    Tetraodon  ======================================
                      Chicken  ======================================
                 Mallard duck  ======================================
           Tibetan ground jay  ======================================
                  Zebra finch  ======================================
                       Medaka  ======================================
          Pundamilia nyererei  ======================================
                  Zebra mbuna  ======================================
        Burton's mouthbreeder  ======================================
          Princess of Burundi  ======================================
                 Nile tilapia  ======================================
               Painted turtle  ======================================
              Green seaturtle  ======================================
           American alligator  ======================================
                Scarlet macaw  ======================================
                      Opossum  ======================================
                   Chinchilla  ======================================
               Naked mole-rat  ======================================
       Lesser Egyptian jerboa  ======================================
                  Rock pigeon  ======================================
          Collared flycatcher  ======================================
          Medium ground finch  ======================================
                       Lizard  ======================================
             Peregrine falcon  ======================================
                 Saker falcon  ======================================
           Chinese tree shrew  ======================================
          Cape elephant shrew  ======================================
                     Platypus  ======================================
              Chinese hamster  ======================================
                 Prairie vole  ======================================
                          Cat  ======================================
                     Bushbaby  ======================================
     Chinese softshell turtle  ======================================
                      Ferret   ======================================
                          Rat  ======================================
                        Mouse  ======================================
              Star-nosed mole  ======================================
                     Marmoset  ======================================
                          Cow  ======================================

Inserts between block 26 and 27 in window
B D                   Tenrec 13782bp

Alignment block 27 of 641 in window, 56695746 - 56695750, 5 bps 
B D                     Human  agcta
B D                     Chimp  agcta
B D                   Gorilla  agcta
B D                 Orangutan  agcta
B D                    Rhesus  agcta
B D                    Baboon  agcta
B D              Green monkey  agcta
B D                  Squirrel  agctc
B D                       Pig  tgctc
B D                    Alpaca  tgctc
               Bactrian camel  tgctc
B D                   Dolphin  tgctc
                 Killer whale  tgctc
             Tibetan antelope  tgctc
B D                     Sheep  tgctc
                Domestic goat  tgctt
B D                     Horse  agctc
B D          White rhinoceros  agctc
B D                       Dog  agctc
B D                     Panda  agctc
               Pacific walrus  agctc
                 Weddell seal  agctc
             Black flying-fox  agctc
B D                   Megabat  agctc
                Big brown bat  tgcta
         David's myotis (bat)  agcta
  D          Little brown bat  agcta
B D                     Shrew  agttc
B D                  Elephant  agctc
B D                   Manatee  agctt
                     Aardvark  agctt
B D                 Armadillo  agcac
B D                  Hedgehog  =====
B D                Guinea pig  =====
B D                      Pika  =====
B D                    Rabbit  =====
B D                Coelacanth  =====
              Golden hamster  =====
B D       Crab-eating macaque  =====
            Brush-tailed rat  =====
B D              Atlantic cod  =====
B D                    Gibbon  =====
                 Spotted gar  =====
B D               Stickleback  =====
          Southern platyfish  =====
      Yellowbelly pufferfish  =====
B D                      Fugu  =====
B D                 Tetraodon  =====
B D                   Chicken  =====
  D              Mallard duck  =====
          Tibetan ground jay  =====
B D               Zebra finch  =====
B D                    Medaka  =====
         Pundamilia nyererei  =====
                 Zebra mbuna  =====
       Burton's mouthbreeder  =====
         Princess of Burundi  =====
B D              Nile tilapia  =====
  D            Painted turtle  =====
  D           Green seaturtle  =====
B D        American alligator  =====
  D             Scarlet macaw  =====
B D                   Opossum  =====
                  Chinchilla  =====
B D            Naked mole-rat  =====
      Lesser Egyptian jerboa  =====
  D               Rock pigeon  =====
  D       Collared flycatcher  =====
B D       Medium ground finch  =====
B D                    Lizard  =====
  D          Peregrine falcon  =====
  D              Saker falcon  =====
            Cape golden mole  -----
          Chinese tree shrew  =====
         Cape elephant shrew  =====
B D                  Platypus  =====
B D           Chinese hamster  =====
                Prairie vole  =====
B D                    Tenrec  =====
B D                       Cat  =====
B D                  Bushbaby  =====
  D  Chinese softshell turtle  =====
B D                   Ferret   =====
B D                       Rat  =====
B D                     Mouse  =====
             Star-nosed mole  =====
B D                  Marmoset  =====
B D                       Cow  =====

Alignment block 28 of 641 in window, 56695751 - 56695761, 11 bps 
B D                     Human  acccaga-------a-tt-t
B D                     Chimp  accgaga-------a-tt-t
B D                   Gorilla  acccaga-------a-tt-t
B D                 Orangutan  acccaga-------a-tt-t
B D                    Rhesus  acccaga-------a-tt-t
B D                    Baboon  acccaga-------a-tt-t
B D              Green monkey  acccaga-------a-tt-t
B D                  Squirrel  acccaga-------a-tt-t
B D                Guinea pig  atccaca-------a-gt-t
             Brush-tailed rat  atccaca-------a-tt-t
B D                       Pig  acccaga-------a-tt-t
B D                    Alpaca  agccaga-------a-tt-t
               Bactrian camel  agccaga-------a-tt-t
B D                   Dolphin  acccaga-------a-tt-t
                 Killer whale  acccaga-------a-tt-t
             Tibetan antelope  actcaaa-------a-tt-t
B D                     Sheep  actcaaa-------a-tt-t
                Domestic goat  actcaaa-------a-tt-t
B D                     Horse  atccagg-------a-tt-t
B D          White rhinoceros  acccaga-------a-tt-t
B D                       Dog  actcaga-------a-tt-t
B D                     Panda  accctga-------a-tt-t
               Pacific walrus  acccaga-------a-tt-t
                 Weddell seal  acccaga-------a-tt-t
             Black flying-fox  actcaga-------a-at-t
B D                   Megabat  actcaga-------a-at-t
                Big brown bat  acctaga-------a-tt-t
         David's myotis (bat)  acctaga-------attt-t
  D          Little brown bat  acctaga-------attt-t
B D                     Shrew  acccaga-------a-tt-t
B D                  Elephant  acccaca-------a-tt-t
B D                   Manatee  gtccaca-------a-tt-c
             Cape golden mole  gtacacaccaaatcg-tt-t
                     Aardvark  attcaca-------a-ttgt
B D                 Armadillo  acccaga-------a-at-t
B D                  Hedgehog  ====================
B D                      Pika  ====================
B D                    Rabbit  ====================
B D                Coelacanth  ====================
              Golden hamster  ====================
B D       Crab-eating macaque  ====================
B D              Atlantic cod  ====================
B D                    Gibbon  ====================
                 Spotted gar  ====================
B D               Stickleback  ====================
          Southern platyfish  ====================
      Yellowbelly pufferfish  ====================
B D                      Fugu  ====================
B D                 Tetraodon  ====================
B D                   Chicken  ====================
  D              Mallard duck  ====================
          Tibetan ground jay  ====================
B D               Zebra finch  ====================
B D                    Medaka  ====================
         Pundamilia nyererei  ====================
                 Zebra mbuna  ====================
       Burton's mouthbreeder  ====================
         Princess of Burundi  ====================
B D              Nile tilapia  ====================
  D            Painted turtle  ====================
  D           Green seaturtle  ====================
B D        American alligator  ====================
  D             Scarlet macaw  ====================
B D                   Opossum  ====================
                  Chinchilla  ====================
B D            Naked mole-rat  ====================
      Lesser Egyptian jerboa  ====================
  D               Rock pigeon  ====================
  D       Collared flycatcher  ====================
B D       Medium ground finch  ====================
B D                    Lizard  ====================
  D          Peregrine falcon  ====================
  D              Saker falcon  ====================
          Chinese tree shrew  ====================
         Cape elephant shrew  ====================
B D                  Platypus  ====================
B D           Chinese hamster  ====================
                Prairie vole  ====================
B D                    Tenrec  ====================
B D                       Cat  ====================
B D                  Bushbaby  ====================
  D  Chinese softshell turtle  ====================
B D                   Ferret   ====================
B D                       Rat  ====================
B D                     Mouse  ====================
             Star-nosed mole  ====================
B D                  Marmoset  ====================
B D                       Cow  ====================

Alignment block 29 of 641 in window, 56695762 - 56695785, 24 bps 
B D                     Human  tgatgtatttctaacttt---gaag---ac
B D                     Chimp  tgatgtatttctaacttt---gaag---ac
B D                   Gorilla  tgatgtatttctaacttt---gaag---ac
B D                 Orangutan  tgatgtatttctaacctt---gaag---ac
B D                    Rhesus  taatgtatttctaacctt---gaag---ac
B D       Crab-eating macaque  taatgtatttctaacctt---gaag---ac
B D                    Baboon  taatgtatttctaacctt---gaag---ac
B D              Green monkey  taatgtatttctaacctt---gaag---ac
B D                  Squirrel  cactgtgcttctgacctt---gaag---at
B D                Guinea pig  tg--atgtctctgacctt---gaag---at
             Brush-tailed rat  tac-aagcttctggtctt---gaaa---at
B D                       Pig  tgacaaatttctgacctt---gaag---ac
B D                    Alpaca  tgataaatttctgacctt---gaaa---ac
               Bactrian camel  tgataaatttctgacctt---gaag---ac
B D                   Dolphin  tgatacatttctgccctt---gaag---ac
                 Killer whale  tgatacatttctgccctt---gaag---ac
             Tibetan antelope  tgactaatttcggacctt---gaag---ac
B D                     Sheep  tgactaatttctgacctt---gaag---ac
                Domestic goat  ttactaatttctgacctt---gaag---ac
B D                     Horse  tgataaatttctgacctt---gaaa---ac
B D          White rhinoceros  tgat-aatttctgacctt---gaag---ac
B D                       Dog  tgataaatttctgacctt---gaaa---ac
B D                     Panda  tgataaa--tctgaccttgaagaag---ac
               Pacific walrus  tgataaatttctgacctt---gaag---ac
                 Weddell seal  tgataaatttctgacctt---gaag---ac
             Black flying-fox  tgataaatttctgacctt---gaag---ac
B D                   Megabat  tgataaatttctgacctt---gaag---ac
                Big brown bat  tgataaatatctgacatt---gaag---ac
         David's myotis (bat)  tgataaatttctgacctt---gaag---ac
  D          Little brown bat  tgataaatttctgacctt---gaag---ac
B D                     Shrew  t-ctaagttcatgatctt---gaat---aa
B D                  Elephant  tgatatatttctgacctt---aaag---ac
B D                   Manatee  tgatatatttctgacctt---gaag----c
             Cape golden mole  tgatatatctctgacctt---ggaggaaac
                     Aardvark  taatacatttctgacctt---gaag---ac
B D                 Armadillo  tgttaaattttttacctt---gaag---ac
B D                  Hedgehog  ==============================
B D                      Pika  ==============================
B D                    Rabbit  ==============================
B D                Coelacanth  ==============================
              Golden hamster  ==============================
B D              Atlantic cod  ==============================
B D                    Gibbon  ==============================
                 Spotted gar  ==============================
B D               Stickleback  ==============================
          Southern platyfish  ==============================
      Yellowbelly pufferfish  ==============================
B D                      Fugu  ==============================
B D                 Tetraodon  ==============================
B D                   Chicken  ==============================
  D              Mallard duck  ==============================
          Tibetan ground jay  ==============================
B D               Zebra finch  ==============================
B D                    Medaka  ==============================
         Pundamilia nyererei  ==============================
                 Zebra mbuna  ==============================
       Burton's mouthbreeder  ==============================
         Princess of Burundi  ==============================
B D              Nile tilapia  ==============================
  D            Painted turtle  ==============================
  D           Green seaturtle  ==============================
B D        American alligator  ==============================
  D             Scarlet macaw  ==============================
B D                   Opossum  ==============================
                  Chinchilla  ==============================
B D            Naked mole-rat  ==============================
      Lesser Egyptian jerboa  ==============================
  D               Rock pigeon  ==============================
  D       Collared flycatcher  ==============================
B D       Medium ground finch  ==============================
B D                    Lizard  ==============================
  D          Peregrine falcon  ==============================
  D              Saker falcon  ==============================
          Chinese tree shrew  ==============================
         Cape elephant shrew  ==============================
B D                  Platypus  ==============================
B D           Chinese hamster  ==============================
                Prairie vole  ==============================
B D                    Tenrec  ==============================
B D                       Cat  ==============================
B D                  Bushbaby  ==============================
  D  Chinese softshell turtle  ==============================
B D                   Ferret   ==============================
B D                       Rat  ==============================
B D                     Mouse  ==============================
             Star-nosed mole  ==============================
B D                  Marmoset  ==============================
B D                       Cow  ==============================

Inserts between block 29 and 30 in window
B D                   Alpaca 2027bp
              Bactrian camel 2028bp

Alignment block 30 of 641 in window, 56695786 - 56695796, 11 bps 
B D                     Human  cagttagaaaa
B D                     Chimp  cagttagaaaa
B D                   Gorilla  cagttagaaaa
B D                 Orangutan  cagttagaaaa
B D                    Rhesus  cagttagaaaa
B D       Crab-eating macaque  cagttagaaaa
B D                    Baboon  cagttagaaaa
B D              Green monkey  cagttagaaaa
B D                  Squirrel  cagttagaaaa
B D                Guinea pig  cagttacaaag
             Brush-tailed rat  tagttaccaa-
B D                       Pig  cagttagaaaa
B D                   Dolphin  cagttagagaa
                 Killer whale  cagttagagaa
             Tibetan antelope  cagttagaaaa
B D                     Sheep  cagttagaaaa
                Domestic goat  cagttagaaaa
B D                     Horse  caattagaaaa
B D          White rhinoceros  taattagaaag
B D                       Dog  caattagaaat
B D                     Panda  catttagaaaa
               Pacific walrus  caattagaaaa
                 Weddell seal  caattagaaaa
             Black flying-fox  cagttagaaaa
B D                   Megabat  cagttagaaaa
                Big brown bat  cagttagaaaa
         David's myotis (bat)  caattagaaaa
  D          Little brown bat  cagttagaaaa
B D                     Shrew  aaggaagaaga
B D                  Elephant  tagctggaaaa
B D                   Manatee  tagttagaaaa
             Cape golden mole  cagttagaaat
                     Aardvark  cagttagaaaa
B D                 Armadillo  tagttagaaaa
B D                  Hedgehog  ===========
B D                      Pika  ===========
B D                    Rabbit  ===========
B D                Coelacanth  ===========
              Golden hamster  ===========
B D              Atlantic cod  ===========
B D                    Gibbon  ===========
                 Spotted gar  ===========
B D               Stickleback  ===========
          Southern platyfish  ===========
      Yellowbelly pufferfish  ===========
B D                      Fugu  ===========
B D                 Tetraodon  ===========
B D                   Chicken  ===========
  D              Mallard duck  ===========
          Tibetan ground jay  ===========
B D               Zebra finch  ===========
B D                    Medaka  ===========
         Pundamilia nyererei  ===========
                 Zebra mbuna  ===========
       Burton's mouthbreeder  ===========
         Princess of Burundi  ===========
B D              Nile tilapia  ===========
  D            Painted turtle  ===========
  D           Green seaturtle  ===========
B D        American alligator  ===========
  D             Scarlet macaw  ===========
B D                   Opossum  ===========
                  Chinchilla  ===========
B D            Naked mole-rat  ===========
      Lesser Egyptian jerboa  ===========
  D               Rock pigeon  ===========
  D       Collared flycatcher  ===========
B D       Medium ground finch  ===========
B D                    Lizard  ===========
  D          Peregrine falcon  ===========
  D              Saker falcon  ===========
          Chinese tree shrew  ===========
         Cape elephant shrew  ===========
B D                  Platypus  ===========
B D           Chinese hamster  ===========
                Prairie vole  ===========
B D                    Tenrec  ===========
B D                       Cat  ===========
B D                  Bushbaby  ===========
  D  Chinese softshell turtle  ===========
B D                   Ferret   ===========
B D                       Rat  ===========
B D                     Mouse  ===========
             Star-nosed mole  ===========
              Bactrian camel  ===========
B D                    Alpaca  ===========
B D                  Marmoset  ===========
B D                       Cow  ===========

Inserts between block 30 and 31 in window
B D                      Pig 1bp
B D                  Dolphin 3bp
                Killer whale 3bp
            Tibetan antelope 2bp
B D                    Sheep 2bp
               Domestic goat 2bp
B D                    Horse 1bp
B D         White rhinoceros 1bp
B D                    Panda 322bp

Alignment block 31 of 641 in window, 56695797 - 56695798, 2 bps 
B D                     Human  gg
B D                     Chimp  gg
B D                   Gorilla  gg
B D                 Orangutan  gg
B D                    Rhesus  gg
B D       Crab-eating macaque  gg
B D                    Baboon  gg
B D              Green monkey  gg
B D                  Squirrel  gg
B D                Guinea pig  aa
B D                       Pig  -g
B D                   Dolphin  gg
                 Killer whale  gg
             Tibetan antelope  gg
B D                     Sheep  gg
                Domestic goat  gg
B D                     Horse  gg
B D          White rhinoceros  gg
B D                       Dog  gg
B D                     Panda  gg
               Pacific walrus  gg
                 Weddell seal  gg
             Black flying-fox  gg
B D                   Megabat  gg
                Big brown bat  gg
         David's myotis (bat)  gg
  D          Little brown bat  gg
B D                     Shrew  -g
B D                  Elephant  gg
B D                   Manatee  gg
             Cape golden mole  gg
                     Aardvark  gg
B D                 Armadillo  gg
B D                  Hedgehog  ==
B D                      Pika  ==
B D                    Rabbit  ==
B D                Coelacanth  ==
              Golden hamster  ==
            Brush-tailed rat  --
B D              Atlantic cod  ==
B D                    Gibbon  ==
                 Spotted gar  ==
B D               Stickleback  ==
          Southern platyfish  ==
      Yellowbelly pufferfish  ==
B D                      Fugu  ==
B D                 Tetraodon  ==
B D                   Chicken  ==
  D              Mallard duck  ==
          Tibetan ground jay  ==
B D               Zebra finch  ==
B D                    Medaka  ==
         Pundamilia nyererei  ==
                 Zebra mbuna  ==
       Burton's mouthbreeder  ==
         Princess of Burundi  ==
B D              Nile tilapia  ==
  D            Painted turtle  ==
  D           Green seaturtle  ==
B D        American alligator  ==
  D             Scarlet macaw  ==
B D                   Opossum  ==
                  Chinchilla  ==
B D            Naked mole-rat  ==
      Lesser Egyptian jerboa  ==
  D               Rock pigeon  ==
  D       Collared flycatcher  ==
B D       Medium ground finch  ==
B D                    Lizard  ==
  D          Peregrine falcon  ==
  D              Saker falcon  ==
          Chinese tree shrew  ==
         Cape elephant shrew  ==
B D                  Platypus  ==
B D           Chinese hamster  ==
                Prairie vole  ==
B D                    Tenrec  ==
B D                       Cat  ==
B D                  Bushbaby  ==
  D  Chinese softshell turtle  ==
B D                   Ferret   ==
B D                       Rat  ==
B D                     Mouse  ==
             Star-nosed mole  ==
              Bactrian camel  ==
B D                    Alpaca  ==
B D                  Marmoset  ==
B D                       Cow  ==

Inserts between block 31 and 32 in window
B D                      Dog 1bp
              Pacific walrus 228bp
                Weddell seal 237bp
            Black flying-fox 2bp
B D                  Megabat 2bp
               Big brown bat 1bp
        David's myotis (bat) 1bp
  D         Little brown bat 1bp

Alignment block 32 of 641 in window, 56695799 - 56695909, 111 bps 
B D                     Human  aatcagataaggaggtttctagtttgggagac----tgggt-gaaatgcgacaccattagctgagactga
B D                     Chimp  aatcagataaggaggtttctagtttgggagac----tgggt-gaaatgtgacaccattagctgagactga
B D                   Gorilla  aatcagataaggaggtttctagtttgggagac----tgggt-gaaatgcgacaccattagctgagactga
B D                 Orangutan  aatcagataaggaggtttctagtttgggagac----tgggt-gaaatgcgacaccattagctgagactga
B D                    Rhesus  agtcagagaaggaggtttctagtttgggagac----tgggt-gaaatttgacaccattagctgagactga
B D       Crab-eating macaque  agtcagagaaggaggtttctagtttgggagac----tgggt-gaaatttgacaccattagctgagactga
B D                    Baboon  agtcagagaaggaggtttctagtttgggagac----tgggt-gaaatttgacaccattagctgagactga
B D              Green monkey  agtcagagaaggaggtttctagtttgggagac----tgggt-gaaattcgacaccattagctgagactga
B D                  Squirrel  gaagagataacaaggtttctaatgtgggaaat----tggtt-gaaatgtgacaccattagctgagactga
B D                Guinea pig  gaagaga----aaagtttctagaatggaagat----tgatt-gaaatgtgataccattacctaactctga
             Brush-tailed rat  -aaaaaa----agagtttctaggttgtaagat----tggtt-gaaatgtgataccattacctaagactaa
B D                       Pig  gaagagataaagaggcttctagtttggtagag----tgggt-gaaatgagacaccattagctgagactaa
B D                   Dolphin  gaagagataaagaggcttctagtttgggagag----ggggt-gaaatgtgacaccattagctgagactga
                 Killer whale  gaagagataaagaggcttctagtttgggagag----ggggt-gaaatgtgacaccattagctgagactga
             Tibetan antelope  gacgagataaagaggcttctagtttgggagag----taggt-gaa---tgacaccattagctgaaactaa
B D                     Sheep  gacgagataaagagccttctagtttgggagag----taggt-gaa---tgacaccattagctgaaactaa
                Domestic goat  gacgagataaagaggcttctagtttgggagag----taggt-gaa---tgacaccattagctgaaactaa
B D                     Horse  aaggagataaggaggt----------agagac----tgggt-aaaatgtgacaccatttgctgagattca
B D          White rhinoceros  gaagagatagggaggtttttagtttgggagat----tgggt-gaaatgtgacaccatttgctgaaactga
B D                       Dog  gaagaaat---gaggtttctacttggggagtt----tcagtaaaaatgcaacaccatcagctgagactga
B D                     Panda  gaatagatgaggaggtttctagttggggagat----tgggt-aaaatgcaacaccattagctgagactga
               Pacific walrus  gaataggtaaggaggtttctagttggggagat----tgggt-aaaatgcaacaccattagctgagactga
                 Weddell seal  gaatagataaggaggtttctagttggggagat----tggat-aaaatgcaacaccattagctgagaccga
             Black flying-fox  gaagagataaggaagtttctagtttgggagat----agggt-gaaatatgacaccattagctgagaccga
B D                   Megabat  gaagagataaggaagtttctagtttgggagat----agggt-gaaatatgacaccattagctgagactga
                Big brown bat  ggatagataaggaggtttctagtttgagagat----tgggt-gacatgtgacaccattagctgagactga
         David's myotis (bat)  ggatagttaaggaggttcctagtttgggagat----tgagt-gaagtgtgacaccattagctgaggctga
  D          Little brown bat  ggatagttaaggaggtttctagtttgggagat----tgagt-g--gtgtgacaccattagctgagcctga
B D                     Shrew  ------atatggatgattccaatgtggaagac--------t-gaaatgtgataccgttagctgagactga
B D                  Elephant  gaagagataagaaggtttctagttcgggagat----tgcgt-gaaatgtgatacctttagatgagactga
B D                   Manatee  gaagagat---aaggtatctagtttgggagat----tgtgt-gaaatgtgataccattagctgagactga
             Cape golden mole  gaagagataaagaggtttctagtttgggagattgactgaat-gaaatgtgatacaattagctgagactga
                     Aardvark  gaagagataaggagttttctagtttgggagat----tgggt-ggaatatgataccattagctaag-ctaa
B D                 Armadillo  gaaaggataaggatgcttctggtttgggagat----tggat-aaaatatgacaccattagctgagactga
B D                  Hedgehog  ======================================================================
B D                      Pika  ======================================================================
B D                    Rabbit  ======================================================================
B D                Coelacanth  ======================================================================
              Golden hamster  ======================================================================
B D              Atlantic cod  ======================================================================
B D                    Gibbon  ======================================================================
                 Spotted gar  ======================================================================
B D               Stickleback  ======================================================================
          Southern platyfish  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                      Fugu  ======================================================================
B D                 Tetraodon  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
B D                    Medaka  ======================================================================
         Pundamilia nyererei  ======================================================================
                 Zebra mbuna  ======================================================================
       Burton's mouthbreeder  ======================================================================
         Princess of Burundi  ======================================================================
B D              Nile tilapia  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D        American alligator  ======================================================================
  D             Scarlet macaw  ======================================================================
B D                   Opossum  ======================================================================
                  Chinchilla  ======================================================================
B D            Naked mole-rat  ======================================================================
      Lesser Egyptian jerboa  ======================================================================
  D               Rock pigeon  ======================================================================
  D       Collared flycatcher  ======================================================================
B D       Medium ground finch  ======================================================================
B D                    Lizard  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
          Chinese tree shrew  ======================================================================
         Cape elephant shrew  ======================================================================
B D                  Platypus  ======================================================================
B D           Chinese hamster  ======================================================================
                Prairie vole  ======================================================================
B D                    Tenrec  ======================================================================
B D                       Cat  ======================================================================
B D                  Bushbaby  ======================================================================
  D  Chinese softshell turtle  ======================================================================
B D                   Ferret   ======================================================================
B D                       Rat  ======================================================================
B D                     Mouse  ======================================================================
             Star-nosed mole  ======================================================================
              Bactrian camel  ======================================================================
B D                    Alpaca  ======================================================================
B D                  Marmoset  ======================================================================
B D                       Cow  ======================================================================

                        Human  aagggac-------agatggaggagt-agaa--ata----taat----ttaatatagtt---------ta
                        Chimp  aagggac-------agatggaggagt-agaa--ata----taat----ttaatatagtt---------ta
                      Gorilla  aagggac-------agatggaggagt-agaa--ata----taat----ttaatatagtt---------ta
                    Orangutan  aagggac-------agatggagaagt-agaa--ata----taat----ttaatataatt---------ta
                       Rhesus  aagggac-------agatggaggagt-agaa--ata----tgat----ttaatattgtt---------ta
          Crab-eating macaque  aagggac-------agatggaggagt-agaa--ata----tgat----ttaatattgtt---------ta
                       Baboon  aagggac-------agatggaggagt-agaa--ata----tgat----ttaatattgtt---------ta
                 Green monkey  aagggac-------agatggaggagt-agaa--ata----tgat----ttaatattgtt---------ta
                     Squirrel  aagggac-------agatggaggagt-tgaaagaga----taat----ttaatattgta---------ta
                   Guinea pig  aaagggc-aatggaggatggaggaat-agaaagaga----aaat----ttaatagtgta---------ta
             Brush-tailed rat  aagggacaaatgaaggatggaggaat-------aga----aaat----ttaatagtgta---------ta
                          Pig  aagggac-------agatggaggagt-aaaaagag--------t----ttaatattgca---------ta
                      Dolphin  aagggac-------agatggaggagt-aaaaagaga----tagt----ttaatattgta---------ta
                 Killer whale  aagggac-------agatggaggagt-aaaaggaga----tagt----ttaatattgta---------ta
             Tibetan antelope  aagggac-------agatggagaagt-aaaaagaga----cact----ttaatattgta---------ta
                        Sheep  aagggac-------agatggagaagt-aaaaagaga----cact----ttaatattgta---------ta
                Domestic goat  aagggac-------agatggagaagt-aaaaagaga----cact----ttaatattgta---------ta
                        Horse  aagggac-------ag----aggagt-aagaagaga-------------gaatattgta----------a
             White rhinoceros  aagggac-------ag----aggagt-aaaaagagata--ctt------taatattgta---------ta
                          Dog  aagggac-------aaatataggagt-aaaaa-aca----taa------ctatattgta---------ta
                        Panda  aagggac-------agatatagaagt-aaaaagagataattta------ttattttgga---------ta
               Pacific walrus  aagggac-------agatataggaat-aagaagaga----tta------ttatattgta---------ta
                 Weddell seal  aagggac-------agatataggagt-aagaagaga----tta------ttatattata---------ta
             Black flying-fox  aagggac-------agacggaggagt-aaaaagaga-------------taatattgta---------ta
                      Megabat  aagggac-------agacggaggagt-aaaaagaga-------------taatattgta---------ta
                Big brown bat  aagggac-------a----gaggagt-aaaaaggga----tcat----ttaatattgta---------ta
         David's myotis (bat)  aagggac-------agatggaggagt-aaaa--aga----tcat----ttaatattgta---------ta
             Little brown bat  aagggac-------agatggaggagt-aaaaagaga----tcat----ttaatattgta---------ta
                        Shrew  aagggac-------agatggaggagt-aaaatgaga----taat----ttaatattgta---------ta
                     Elephant  aaggaac-------acatagggaagt-ggaaa-aga----ttataaatttaatattgta---------ta
                      Manatee  aagggac-------agatgggggagt-ggaaa-aga----ttatcaatttaatattgtatattactacta
             Cape golden mole  aaaggac-------agatagaggagt-agaaa-aga----ttatcaatttaatattgta---------ta
                     Aardvark  aaagggc-------acttgggggagt-ggaaa-aga----ttataa----aatattgca---------ta
                    Armadillo  aagggac-------agatggaggagtgggaaa-aga----taatacatttagtattg-----------ta
                     Hedgehog  ======================================================================