Multiz Alignments of 100 Vertebrates
 

Capitalize exons based on show bases
Place cursor over species for alignment detail. Click on 'B' to link to browser for aligned species, click on 'D' to get DNA for aligned species.
Alignment block 1 of 249 in window, 56690786 - 56690812, 27 bps 
B D                     Human  gttgggagttcgagaccagcctgacca
B D                     Chimp  gttgggagttcgagaccagcctgacca
B D                 Orangutan  gttgggagttcgagaccagcctgacca
B D                    Gibbon  gtcgggagtttgagaccagcctgacca
B D                    Rhesus  gtcaggagttcaagaccagcctggcca
B D       Crab-eating macaque  gtcaggagttcaagaccagcctggcca
B D                    Baboon  gtcaggagttcaagaccagcctggcca
B D              Green monkey  gtcaggagttcaagaccagcctggcca
B D                  Marmoset  tccgagagttcaagttcagcctgggca
B D                  Squirrel  ---------tcaaaaccagcctcagca
B D                Guinea pig  -----gagtttgagaccagcctgggcc
B D                  Hedgehog  ===========================
B D                      Pika  ===========================
B D                    Rabbit  ===========================
B D                Coelacanth  ===========================
B D                   Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                     Shrew  ===========================
              Golden hamster  ===========================
            Brush-tailed rat  ===========================
B D              Atlantic cod  ===========================
                 Spotted gar  ===========================
B D               Stickleback  ===========================
          Southern platyfish  ===========================
      Yellowbelly pufferfish  ===========================
B D                      Fugu  ===========================
B D                 Tetraodon  ===========================
B D                   Chicken  ===========================
  D              Mallard duck  ===========================
          Tibetan ground jay  ===========================
B D               Zebra finch  ===========================
B D                    Medaka  ===========================
         Pundamilia nyererei  ===========================
                 Zebra mbuna  ===========================
       Burton's mouthbreeder  ===========================
         Princess of Burundi  ===========================
B D              Nile tilapia  ===========================
  D            Painted turtle  ===========================
  D           Green seaturtle  ===========================
B D        American alligator  ===========================
  D             Scarlet macaw  ===========================
B D                   Opossum  ===========================
                  Chinchilla  ===========================
B D            Naked mole-rat  ===========================
      Lesser Egyptian jerboa  ===========================
  D               Rock pigeon  ===========================
  D       Collared flycatcher  ===========================
B D       Medium ground finch  ===========================
B D                    Lizard  ===========================
  D          Peregrine falcon  ===========================
  D              Saker falcon  ===========================
            Cape golden mole  ===========================
          Chinese tree shrew  ===========================
         Cape elephant shrew  ===========================
B D                  Platypus  ===========================
B D                   Manatee  ===========================
B D           Chinese hamster  ===========================
                Prairie vole  ===========================
                    Aardvark  ===========================
B D                  Elephant  ===========================
B D                    Tenrec  ===========================
B D                       Cat  ===========================
B D                   Megabat  ===========================
B D                  Bushbaby  ===========================
B D                       Pig  ===========================
  D  Chinese softshell turtle  ===========================
B D                   Ferret   ===========================
B D                   Dolphin  ===========================
B D                       Rat  ===========================
B D                     Mouse  ===========================
B D                     Panda  ===========================
               Domestic goat  ===========================
B D                     Sheep  ===========================
            Tibetan antelope  ===========================
             Star-nosed mole  ===========================
              Bactrian camel  ===========================
B D                    Alpaca  ===========================
              Pacific walrus  ===========================
            Black flying-fox  ===========================
B D          White rhinoceros  ===========================
B D                     Horse  ===========================
B D                 Armadillo  ---------------------------
                Weddell seal  ===========================
        David's myotis (bat)  ===========================
               Big brown bat  ===========================
  D          Little brown bat  ===========================
B D                       Dog  ===========================
B D                       Cow  ===========================
                Killer whale  ===========================

Inserts between block 1 and 2 in window
B D                 Squirrel 74bp

Alignment block 2 of 249 in window, 56690813 - 56690821, 9 bps 
B D                     Human  acatggaga
B D                     Chimp  acatggaga
B D                 Orangutan  acatggaga
B D                    Gibbon  acatgaaga
B D                    Rhesus  acagggcaa
B D       Crab-eating macaque  acagggcaa
B D                    Baboon  acagggcaa
B D              Green monkey  acagggcaa
B D                  Marmoset  acataggga
B D                Guinea pig  acatagtga
B D                  Hedgehog  =========
B D                      Pika  =========
B D                    Rabbit  =========
B D                Coelacanth  =========
B D                   Gorilla  NNNNNNNNN
B D                     Shrew  =========
              Golden hamster  =========
            Brush-tailed rat  =========
B D              Atlantic cod  =========
                 Spotted gar  =========
B D               Stickleback  =========
          Southern platyfish  =========
      Yellowbelly pufferfish  =========
B D                      Fugu  =========
B D                 Tetraodon  =========
B D                   Chicken  =========
  D              Mallard duck  =========
          Tibetan ground jay  =========
B D               Zebra finch  =========
B D                    Medaka  =========
         Pundamilia nyererei  =========
                 Zebra mbuna  =========
       Burton's mouthbreeder  =========
         Princess of Burundi  =========
B D              Nile tilapia  =========
  D            Painted turtle  =========
  D           Green seaturtle  =========
B D        American alligator  =========
  D             Scarlet macaw  =========
B D                   Opossum  =========
                  Chinchilla  =========
B D            Naked mole-rat  =========
      Lesser Egyptian jerboa  =========
  D               Rock pigeon  =========
  D       Collared flycatcher  =========
B D       Medium ground finch  =========
B D                    Lizard  =========
  D          Peregrine falcon  =========
  D              Saker falcon  =========
            Cape golden mole  =========
          Chinese tree shrew  =========
         Cape elephant shrew  =========
B D                  Platypus  =========
B D                   Manatee  =========
B D           Chinese hamster  =========
                Prairie vole  =========
                    Aardvark  =========
B D                  Elephant  =========
B D                    Tenrec  =========
B D                       Cat  =========
B D                   Megabat  =========
B D                  Bushbaby  =========
B D                       Pig  =========
  D  Chinese softshell turtle  =========
B D                   Ferret   =========
B D                   Dolphin  =========
B D                       Rat  =========
B D                     Mouse  =========
B D                     Panda  =========
               Domestic goat  =========
B D                     Sheep  =========
            Tibetan antelope  =========
             Star-nosed mole  =========
              Bactrian camel  =========
B D                    Alpaca  =========
              Pacific walrus  =========
            Black flying-fox  =========
B D          White rhinoceros  =========
B D                     Horse  =========
B D                  Squirrel  =========
B D                 Armadillo  ---------
                Weddell seal  =========
        David's myotis (bat)  =========
               Big brown bat  =========
  D          Little brown bat  =========
B D                       Dog  =========
B D                       Cow  =========
                Killer whale  =========

Inserts between block 2 and 3 in window
B D               Guinea pig 6010bp

Alignment block 3 of 249 in window, 56690822 - 56690859, 38 bps 
B D                     Human  aaccccatctctactaaaaaacacaaaattagccgggc
B D                     Chimp  aaccccatctctactaaaaaacacaaaattagccgggc
B D                 Orangutan  aaccccatttctactaaaaaacacaaaattagcggggc
B D                    Gibbon  aaccccatctttactaaaaaacacaaaattagccgagc
B D                    Rhesus  aaccccatctctactaaaaatacaaaaattagttggac
B D       Crab-eating macaque  aaccccatctctactaaaaatacaaaaattagttggac
B D                    Baboon  aaccccatctctactaaaaatacaaaaattagttggac
B D              Green monkey  aaccccatctctaccaaaaatacaaaaattagttggac
B D                  Marmoset  gaccctgtctttcaaaaaataaataaaatagactgagc
B D                  Hedgehog  ======================================
B D                Guinea pig  ======================================
B D                      Pika  ======================================
B D                    Rabbit  ======================================
B D                Coelacanth  ======================================
B D                   Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                     Shrew  ======================================
              Golden hamster  ======================================
            Brush-tailed rat  ======================================
B D              Atlantic cod  ======================================
                 Spotted gar  ======================================
B D               Stickleback  ======================================
          Southern platyfish  ======================================
      Yellowbelly pufferfish  ======================================
B D                      Fugu  ======================================
B D                 Tetraodon  ======================================
B D                   Chicken  ======================================
  D              Mallard duck  ======================================
          Tibetan ground jay  ======================================
B D               Zebra finch  ======================================
B D                    Medaka  ======================================
         Pundamilia nyererei  ======================================
                 Zebra mbuna  ======================================
       Burton's mouthbreeder  ======================================
         Princess of Burundi  ======================================
B D              Nile tilapia  ======================================
  D            Painted turtle  ======================================
  D           Green seaturtle  ======================================
B D        American alligator  ======================================
  D             Scarlet macaw  ======================================
B D                   Opossum  ======================================
                  Chinchilla  ======================================
B D            Naked mole-rat  ======================================
      Lesser Egyptian jerboa  ======================================
  D               Rock pigeon  ======================================
  D       Collared flycatcher  ======================================
B D       Medium ground finch  ======================================
B D                    Lizard  ======================================
  D          Peregrine falcon  ======================================
  D              Saker falcon  ======================================
            Cape golden mole  ======================================
          Chinese tree shrew  ======================================
         Cape elephant shrew  ======================================
B D                  Platypus  ======================================
B D                   Manatee  ======================================
B D           Chinese hamster  ======================================
                Prairie vole  ======================================
                    Aardvark  ======================================
B D                  Elephant  ======================================
B D                    Tenrec  ======================================
B D                       Cat  ======================================
B D                   Megabat  ======================================
B D                  Bushbaby  ======================================
B D                       Pig  ======================================
  D  Chinese softshell turtle  ======================================
B D                   Ferret   ======================================
B D                   Dolphin  ======================================
B D                       Rat  ======================================
B D                     Mouse  ======================================
B D                     Panda  ======================================
               Domestic goat  ======================================
B D                     Sheep  ======================================
            Tibetan antelope  ======================================
             Star-nosed mole  ======================================
              Bactrian camel  ======================================
B D                    Alpaca  ======================================
              Pacific walrus  ======================================
            Black flying-fox  ======================================
B D          White rhinoceros  ======================================
B D                     Horse  ======================================
B D                  Squirrel  ======================================
B D                 Armadillo  --------------------------------------
                Weddell seal  ======================================
        David's myotis (bat)  ======================================
               Big brown bat  ======================================
  D          Little brown bat  ======================================
B D                       Dog  ======================================
B D                       Cow  ======================================
                Killer whale  ======================================

Inserts between block 3 and 4 in window
B D                 Marmoset 4403bp

Alignment block 4 of 249 in window, 56690860 - 56690913, 54 bps 
B D                     Human  gtggtggcgcatgcctggaatcccagctaccagggaggctgaggcaggagaatt
B D                     Chimp  gtgggggcgcatgcctgtaatcccagctaccagggaggctgaggcaggagaatt
B D                 Orangutan  gtggtagcgcatgcctgtaatcccagctaccagggaggctggggcaggagaatt
B D                    Gibbon  atggtggcgcatgcctgtaatcccagctaccagggaggctgaggcaggagaatt
B D                    Rhesus  gtggtggcaggcacctgtaatcccagctacttgggaggctgaggcagaagaatt
B D       Crab-eating macaque  gtggtggcaggcacctgtaatcccagctacttgggaggctgaggcagaagaatt
B D                    Baboon  gtggtggcaggcacctgtaatcccagctacttgggaggctgaggcagaagaatt
B D              Green monkey  gtggtggcaggcacctgtaatcccagctacttgggaggctgaggcagaagaatt
B D                  Hedgehog  ======================================================
B D                Guinea pig  ======================================================
B D                      Pika  ======================================================
B D                    Rabbit  ======================================================
B D                Coelacanth  ======================================================
B D                   Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                     Shrew  ======================================================
              Golden hamster  ======================================================
            Brush-tailed rat  ======================================================
B D              Atlantic cod  ======================================================
                 Spotted gar  ======================================================
B D               Stickleback  ======================================================
          Southern platyfish  ======================================================
      Yellowbelly pufferfish  ======================================================
B D                      Fugu  ======================================================
B D                 Tetraodon  ======================================================
B D                   Chicken  ======================================================
  D              Mallard duck  ======================================================
          Tibetan ground jay  ======================================================
B D               Zebra finch  ======================================================
B D                    Medaka  ======================================================
         Pundamilia nyererei  ======================================================
                 Zebra mbuna  ======================================================
       Burton's mouthbreeder  ======================================================
         Princess of Burundi  ======================================================
B D              Nile tilapia  ======================================================
  D            Painted turtle  ======================================================
  D           Green seaturtle  ======================================================
B D        American alligator  ======================================================
  D             Scarlet macaw  ======================================================
B D                   Opossum  ======================================================
                  Chinchilla  ======================================================
B D            Naked mole-rat  ======================================================
      Lesser Egyptian jerboa  ======================================================
  D               Rock pigeon  ======================================================
  D       Collared flycatcher  ======================================================
B D       Medium ground finch  ======================================================
B D                    Lizard  ======================================================
  D          Peregrine falcon  ======================================================
  D              Saker falcon  ======================================================
            Cape golden mole  ======================================================
          Chinese tree shrew  ======================================================
         Cape elephant shrew  ======================================================
B D                  Platypus  ======================================================
B D                   Manatee  ======================================================
B D           Chinese hamster  ======================================================
                Prairie vole  ======================================================
                    Aardvark  ======================================================
B D                  Elephant  ======================================================
B D                    Tenrec  ======================================================
B D                       Cat  ======================================================
B D                   Megabat  ======================================================
B D                  Bushbaby  ======================================================
B D                       Pig  ======================================================
  D  Chinese softshell turtle  ======================================================
B D                   Ferret   ======================================================
B D                   Dolphin  ======================================================
B D                       Rat  ======================================================
B D                     Mouse  ======================================================
B D                     Panda  ======================================================
               Domestic goat  ======================================================
B D                     Sheep  ======================================================
            Tibetan antelope  ======================================================
             Star-nosed mole  ======================================================
              Bactrian camel  ======================================================
B D                    Alpaca  ======================================================
              Pacific walrus  ======================================================
            Black flying-fox  ======================================================
B D          White rhinoceros  ======================================================
B D                     Horse  ======================================================
B D                  Squirrel  ======================================================
B D                 Armadillo  ------------------------------------------------------
                Weddell seal  ======================================================
        David's myotis (bat)  ======================================================
               Big brown bat  ======================================================
  D          Little brown bat  ======================================================
B D                  Marmoset  ======================================================
B D                       Dog  ======================================================
B D                       Cow  ======================================================
                Killer whale  ======================================================

Alignment block 5 of 249 in window, 56690914 - 56690990, 77 bps 
B D                     Human  gcttgaacccaggaggtggaggttgcagtgagccgagatcatgccattgcactacagcctgggcgacaag
B D                     Chimp  gcttgaacccgggaggtggaggttgcagtgagccgagatcatgccattgcactacagcctgggcgacaag
B D                 Orangutan  gcttgaacccgggaggtggaggttgcagtgagccaagatcatgccattgcactccagcctgggcgacaag
B D                    Gibbon  gcttgaacccgggaggtggaggttgcagtgagccgagatcatgccattgcactccagcctgggcgacaag
B D                    Rhesus  gcttgaacctgggaggcagaggttgcagtgagccaagatcatgccattgcatttcagcctgggcaacaag
B D       Crab-eating macaque  gcttgaacctgggaggcagaggttgcagtgagccaagatcatgccattgcatttcagcctgggcaacaag
B D                    Baboon  gcttgaacctgggaggcagaggttgcagtgagccaagatcatgccattgcatttcagcctgggcaacaag
B D              Green monkey  gcttgaacctgggaggcagaggttgcagtgagccaagatcatgccattgcatttcagccggggcaacaaa
B D                  Squirrel  gattgaacccagggttttgcacgtgc--taggcgagcactctaccactcagccacaaccccagccccaag
B D                  Hedgehog  ======================================================================
B D                Guinea pig  ======================================================================
B D                      Pika  ======================================================================
B D                    Rabbit  ======================================================================
B D                Coelacanth  ======================================================================
B D                   Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                     Shrew  ======================================================================
              Golden hamster  ======================================================================
            Brush-tailed rat  ======================================================================
B D              Atlantic cod  ======================================================================
                 Spotted gar  ======================================================================
B D               Stickleback  ======================================================================
          Southern platyfish  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                      Fugu  ======================================================================
B D                 Tetraodon  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
B D                    Medaka  ======================================================================
         Pundamilia nyererei  ======================================================================
                 Zebra mbuna  ======================================================================
       Burton's mouthbreeder  ======================================================================
         Princess of Burundi  ======================================================================
B D              Nile tilapia  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D        American alligator  ======================================================================
  D             Scarlet macaw  ======================================================================
B D                   Opossum  ======================================================================
                  Chinchilla  ======================================================================
B D            Naked mole-rat  ======================================================================
      Lesser Egyptian jerboa  ======================================================================
  D               Rock pigeon  ======================================================================
  D       Collared flycatcher  ======================================================================
B D       Medium ground finch  ======================================================================
B D                    Lizard  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
            Cape golden mole  ======================================================================
          Chinese tree shrew  ======================================================================
         Cape elephant shrew  ======================================================================
B D                  Platypus  ======================================================================
B D                   Manatee  ======================================================================
B D           Chinese hamster  ======================================================================
                Prairie vole  ======================================================================
                    Aardvark  ======================================================================
B D                  Elephant  ======================================================================
B D                    Tenrec  ======================================================================
B D                       Cat  ======================================================================
B D                   Megabat  ======================================================================
B D                  Bushbaby  ======================================================================
B D                       Pig  ======================================================================
  D  Chinese softshell turtle  ======================================================================
B D                   Ferret   ======================================================================
B D                   Dolphin  ======================================================================
B D                       Rat  ======================================================================
B D                     Mouse  ======================================================================
B D                     Panda  ======================================================================
               Domestic goat  ======================================================================
B D                     Sheep  ======================================================================
            Tibetan antelope  ======================================================================
             Star-nosed mole  ======================================================================
              Bactrian camel  ======================================================================
B D                    Alpaca  ======================================================================
              Pacific walrus  ======================================================================
            Black flying-fox  ======================================================================
B D          White rhinoceros  ======================================================================
B D                     Horse  ======================================================================
B D                 Armadillo  ----------------------------------------------------------------------
                Weddell seal  ======================================================================
        David's myotis (bat)  ======================================================================
               Big brown bat  ======================================================================
  D          Little brown bat  ======================================================================
B D                  Marmoset  ======================================================================
B D                       Dog  ======================================================================
B D                       Cow  ======================================================================
                Killer whale  ======================================================================

                        Human  agcaaaa
                        Chimp  agtgaaa
                    Orangutan  agcgaaa
                       Gibbon  agtgaaa
                       Rhesus  agcgaaa
          Crab-eating macaque  agcgaaa
                       Baboon  agtgaaa
                 Green monkey  agcgaaa
                     Squirrel  a------
                     Hedgehog  =======
                   Guinea pig  =======
                         Pika  =======
                       Rabbit  =======
                   Coelacanth  =======
                      Gorilla  NNNNNNN
                        Shrew  =======
               Golden hamster  =======
             Brush-tailed rat  =======
                 Atlantic cod  =======
                  Spotted gar  =======
                  Stickleback  =======
           Southern platyfish  =======
       Yellowbelly pufferfish  =======
                         Fugu  =======
                    Tetraodon  =======
                      Chicken  =======
                 Mallard duck  =======
           Tibetan ground jay  =======
                  Zebra finch  =======
                       Medaka  =======
          Pundamilia nyererei  =======
                  Zebra mbuna  =======
        Burton's mouthbreeder  =======
          Princess of Burundi  =======
                 Nile tilapia  =======
               Painted turtle  =======
              Green seaturtle  =======
           American alligator  =======
                Scarlet macaw  =======
                      Opossum  =======
                   Chinchilla  =======
               Naked mole-rat  =======
       Lesser Egyptian jerboa  =======
                  Rock pigeon  =======
          Collared flycatcher  =======
          Medium ground finch  =======
                       Lizard  =======
             Peregrine falcon  =======
                 Saker falcon  =======
             Cape golden mole  =======
           Chinese tree shrew  =======
          Cape elephant shrew  =======
                     Platypus  =======
                      Manatee  =======
              Chinese hamster  =======
                 Prairie vole  =======
                     Aardvark  =======
                     Elephant  =======
                       Tenrec  =======
                          Cat  =======
                      Megabat  =======
                     Bushbaby  =======
                          Pig  =======
     Chinese softshell turtle  =======
                      Ferret   =======
                      Dolphin  =======
                          Rat  =======
                        Mouse  =======
                        Panda  =======
                Domestic goat  =======
                        Sheep  =======
             Tibetan antelope  =======
              Star-nosed mole  =======
               Bactrian camel  =======
                       Alpaca  =======
               Pacific walrus  =======
             Black flying-fox  =======
             White rhinoceros  =======
                        Horse  =======
                    Armadillo  -------
                 Weddell seal  =======
         David's myotis (bat)  =======
                Big brown bat  =======
             Little brown bat  =======
                     Marmoset  =======
                          Dog  =======
                          Cow  =======
                 Killer whale  =======

Alignment block 6 of 249 in window, 56690991 - 56690995, 5 bps 
B D                     Human  ctctg
B D                     Chimp  ctctg
B D                 Orangutan  ctccg
B D                    Gibbon  ctctg
B D                    Rhesus  ttctg
B D                    Baboon  ttctg
B D              Green monkey  ttctg
B D                  Squirrel  ccctg
B D                  Hedgehog  =====
B D                Guinea pig  =====
B D                      Pika  =====
B D                    Rabbit  =====
B D                Coelacanth  =====
B D                   Gorilla  NNNNN
B D                     Shrew  =====
              Golden hamster  =====
B D       Crab-eating macaque  -----
            Brush-tailed rat  =====
B D              Atlantic cod  =====
                 Spotted gar  =====
B D               Stickleback  =====
          Southern platyfish  =====
      Yellowbelly pufferfish  =====
B D                      Fugu  =====
B D                 Tetraodon  =====
B D                   Chicken  =====
  D              Mallard duck  =====
          Tibetan ground jay  =====
B D               Zebra finch  =====
B D                    Medaka  =====
         Pundamilia nyererei  =====
                 Zebra mbuna  =====
       Burton's mouthbreeder  =====
         Princess of Burundi  =====
B D              Nile tilapia  =====
  D            Painted turtle  =====
  D           Green seaturtle  =====
B D        American alligator  =====
  D             Scarlet macaw  =====
B D                   Opossum  =====
                  Chinchilla  =====
B D            Naked mole-rat  =====
      Lesser Egyptian jerboa  =====
  D               Rock pigeon  =====
  D       Collared flycatcher  =====
B D       Medium ground finch  =====
B D                    Lizard  =====
  D          Peregrine falcon  =====
  D              Saker falcon  =====
            Cape golden mole  =====
          Chinese tree shrew  =====
         Cape elephant shrew  =====
B D                  Platypus  =====
B D                   Manatee  =====
B D           Chinese hamster  =====
                Prairie vole  =====
                    Aardvark  =====
B D                  Elephant  =====
B D                    Tenrec  =====
B D                       Cat  =====
B D                   Megabat  =====
B D                  Bushbaby  =====
B D                       Pig  =====
  D  Chinese softshell turtle  =====
B D                   Ferret   =====
B D                   Dolphin  =====
B D                       Rat  =====
B D                     Mouse  =====
B D                     Panda  =====
               Domestic goat  =====
B D                     Sheep  =====
            Tibetan antelope  =====
             Star-nosed mole  =====
              Bactrian camel  =====
B D                    Alpaca  =====
              Pacific walrus  =====
            Black flying-fox  =====
B D          White rhinoceros  =====
B D                     Horse  =====
B D                 Armadillo  -----
                Weddell seal  =====
        David's myotis (bat)  =====
               Big brown bat  =====
  D          Little brown bat  =====
B D                  Marmoset  =====
B D                       Dog  =====
B D                       Cow  =====
                Killer whale  =====

Inserts between block 6 and 7 in window
B D             Green monkey 1584bp

Alignment block 7 of 249 in window, 56690996 - 56691011, 16 bps 
B D                     Human  tctc-----aaaaaaagaaaa--
B D                     Chimp  tctc-----aaaaaaagaaaa--
B D                 Orangutan  tctcaaaaaaaaaaaaaaaaa--
B D                    Gibbon  tctc---aaaaaaaaaaaaaa--
B D                    Rhesus  tctc-----aaaaaaaaaaaa--
B D                    Baboon  tctc-----aaaaaaaaaaaa--
B D                  Squirrel  tctttaaataaaatataaacaag
B D                  Hedgehog  =======================
B D                Guinea pig  =======================
B D                      Pika  =======================
B D                    Rabbit  =======================
B D                Coelacanth  =======================
B D                   Gorilla  NNNNNNNNNNNNNNNNNNNNNNN
B D                     Shrew  =======================
              Golden hamster  =======================
B D              Green monkey  =======================
B D       Crab-eating macaque  -----------------------
            Brush-tailed rat  =======================
B D              Atlantic cod  =======================
                 Spotted gar  =======================
B D               Stickleback  =======================
          Southern platyfish  =======================
      Yellowbelly pufferfish  =======================
B D                      Fugu  =======================
B D                 Tetraodon  =======================
B D                   Chicken  =======================
  D              Mallard duck  =======================
          Tibetan ground jay  =======================
B D               Zebra finch  =======================
B D                    Medaka  =======================
         Pundamilia nyererei  =======================
                 Zebra mbuna  =======================
       Burton's mouthbreeder  =======================
         Princess of Burundi  =======================
B D              Nile tilapia  =======================
  D            Painted turtle  =======================
  D           Green seaturtle  =======================
B D        American alligator  =======================
  D             Scarlet macaw  =======================
B D                   Opossum  =======================
                  Chinchilla  =======================
B D            Naked mole-rat  =======================
      Lesser Egyptian jerboa  =======================
  D               Rock pigeon  =======================
  D       Collared flycatcher  =======================
B D       Medium ground finch  =======================
B D                    Lizard  =======================
  D          Peregrine falcon  =======================
  D              Saker falcon  =======================
            Cape golden mole  =======================
          Chinese tree shrew  =======================
         Cape elephant shrew  =======================
B D                  Platypus  =======================
B D                   Manatee  =======================
B D           Chinese hamster  =======================
                Prairie vole  =======================
                    Aardvark  =======================
B D                  Elephant  =======================
B D                    Tenrec  =======================
B D                       Cat  =======================
B D                   Megabat  =======================
B D                  Bushbaby  =======================
B D                       Pig  =======================
  D  Chinese softshell turtle  =======================
B D                   Ferret   =======================
B D                   Dolphin  =======================
B D                       Rat  =======================
B D                     Mouse  =======================
B D                     Panda  =======================
               Domestic goat  =======================
B D                     Sheep  =======================
            Tibetan antelope  =======================
             Star-nosed mole  =======================
              Bactrian camel  =======================
B D                    Alpaca  =======================
              Pacific walrus  =======================
            Black flying-fox  =======================
B D          White rhinoceros  =======================
B D                     Horse  =======================
B D                 Armadillo  -----------------------
                Weddell seal  =======================
        David's myotis (bat)  =======================
               Big brown bat  =======================
  D          Little brown bat  =======================
B D                  Marmoset  =======================
B D                       Dog  =======================
B D                       Cow  =======================
                Killer whale  =======================

Inserts between block 7 and 8 in window
B D                   Rhesus 6bp
B D                 Squirrel 14bp

Alignment block 8 of 249 in window, 56691012 - 56691031, 20 bps 
B D                     Human  gtctcctgggtatag-----ggaat
B D                     Chimp  gtctcctgggtatag-----ggaat
B D                 Orangutan  gtttcctgggtatag-----ggagt
B D                    Gibbon  gtctcctgggtatag-----ggaat
B D                    Baboon  ---------------------aaaa
B D                  Squirrel  gcatccctgggttaatccctggtac
B D                   Manatee  gtcttctgggtatag-----ggaat
                     Aardvark  gtcttctgggtatag-----ggaat
B D                  Hedgehog  =========================
B D                Guinea pig  =========================
B D                      Pika  =========================
B D                    Rabbit  =========================
B D                Coelacanth  =========================
B D                   Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNN
B D                     Shrew  =========================
              Golden hamster  =========================
B D              Green monkey  =========================
B D       Crab-eating macaque  -------------------------
B D                    Rhesus  =========================
            Brush-tailed rat  =========================
B D              Atlantic cod  =========================
                 Spotted gar  =========================
B D               Stickleback  =========================
          Southern platyfish  =========================
      Yellowbelly pufferfish  =========================
B D                      Fugu  =========================
B D                 Tetraodon  =========================
B D                   Chicken  =========================
  D              Mallard duck  =========================
          Tibetan ground jay  =========================
B D               Zebra finch  =========================
B D                    Medaka  =========================
         Pundamilia nyererei  =========================
                 Zebra mbuna  =========================
       Burton's mouthbreeder  =========================
         Princess of Burundi  =========================
B D              Nile tilapia  =========================
  D            Painted turtle  =========================
  D           Green seaturtle  =========================
B D        American alligator  =========================
  D             Scarlet macaw  =========================
B D                   Opossum  =========================
                  Chinchilla  =========================
B D            Naked mole-rat  =========================
      Lesser Egyptian jerboa  =========================
  D               Rock pigeon  =========================
  D       Collared flycatcher  =========================
B D       Medium ground finch  =========================
B D                    Lizard  =========================
  D          Peregrine falcon  =========================
  D              Saker falcon  =========================
            Cape golden mole  =========================
          Chinese tree shrew  =========================
         Cape elephant shrew  =========================
B D                  Platypus  =========================
B D           Chinese hamster  =========================
                Prairie vole  =========================
B D                  Elephant  =========================
B D                    Tenrec  =========================
B D                       Cat  =========================
B D                   Megabat  =========================
B D                  Bushbaby  =========================
B D                       Pig  =========================
  D  Chinese softshell turtle  =========================
B D                   Ferret   =========================
B D                   Dolphin  =========================
B D                       Rat  =========================
B D                     Mouse  =========================
B D                     Panda  =========================
               Domestic goat  =========================
B D                     Sheep  =========================
            Tibetan antelope  =========================
             Star-nosed mole  =========================
              Bactrian camel  =========================
B D                    Alpaca  =========================
              Pacific walrus  =========================
            Black flying-fox  =========================
B D          White rhinoceros  =========================
B D                     Horse  =========================
B D                 Armadillo  -------------------------
                Weddell seal  =========================
        David's myotis (bat)  =========================
               Big brown bat  =========================
  D          Little brown bat  =========================
B D                  Marmoset  =========================
B D                       Dog  =========================
B D                       Cow  =========================
                Killer whale  =========================

Alignment block 9 of 249 in window, 56691032 - 56691037, 6 bps 
B D                     Human  -aaaaat
B D                     Chimp  -aaaaat
B D                 Orangutan  -aaaaat
B D                    Gibbon  -aaaaat
B D                    Baboon  -aaaaat
B D                  Squirrel  -aaaaag
                     Aardvark  aagaaa-
B D                  Hedgehog  =======
B D                Guinea pig  =======
B D                      Pika  =======
B D                    Rabbit  =======
B D                Coelacanth  =======
B D                   Gorilla  NNNNNNN
B D                     Shrew  =======
              Golden hamster  =======
B D              Green monkey  =======
B D       Crab-eating macaque  -------
B D                    Rhesus  =======
            Brush-tailed rat  =======
B D              Atlantic cod  =======
                 Spotted gar  =======
B D               Stickleback  =======
          Southern platyfish  =======
      Yellowbelly pufferfish  =======
B D                      Fugu  =======
B D                 Tetraodon  =======
B D                   Chicken  =======
  D              Mallard duck  =======
          Tibetan ground jay  =======
B D               Zebra finch  =======
B D                    Medaka  =======
         Pundamilia nyererei  =======
                 Zebra mbuna  =======
       Burton's mouthbreeder  =======
         Princess of Burundi  =======
B D              Nile tilapia  =======
  D            Painted turtle  =======
  D           Green seaturtle  =======
B D        American alligator  =======
  D             Scarlet macaw  =======
B D                   Opossum  =======
                  Chinchilla  =======
B D            Naked mole-rat  =======
      Lesser Egyptian jerboa  =======
  D               Rock pigeon  =======
  D       Collared flycatcher  =======
B D       Medium ground finch  =======
B D                    Lizard  =======
  D          Peregrine falcon  =======
  D              Saker falcon  =======
            Cape golden mole  =======
          Chinese tree shrew  =======
         Cape elephant shrew  =======
B D                  Platypus  =======
B D                   Manatee  -------
B D           Chinese hamster  =======
                Prairie vole  =======
B D                  Elephant  =======
B D                    Tenrec  =======
B D                       Cat  =======
B D                   Megabat  =======
B D                  Bushbaby  =======
B D                       Pig  =======
  D  Chinese softshell turtle  =======
B D                   Ferret   =======
B D                   Dolphin  =======
B D                       Rat  =======
B D                     Mouse  =======
B D                     Panda  =======
               Domestic goat  =======
B D                     Sheep  =======
            Tibetan antelope  =======
             Star-nosed mole  =======
              Bactrian camel  =======
B D                    Alpaca  =======
              Pacific walrus  =======
            Black flying-fox  =======
B D          White rhinoceros  =======
B D                     Horse  =======
B D                 Armadillo  -------
                Weddell seal  =======
        David's myotis (bat)  =======
               Big brown bat  =======
  D          Little brown bat  =======
B D                  Marmoset  =======
B D                       Dog  =======
B D                       Cow  =======
                Killer whale  =======

Inserts between block 9 and 10 in window
B D                   Baboon 58bp
B D                 Squirrel 2bp

Alignment block 10 of 249 in window, 56691038 - 56691043, 6 bps 
B D                     Human  tgg--gcc
B D                     Chimp  tgg--gcc
B D                 Orangutan  tgg--gcc
B D                    Gibbon  tgg--gct
B D                  Squirrel  tggaagct
                     Aardvark  ttg--gcc
B D                  Hedgehog  ========
B D                Guinea pig  ========
B D                      Pika  ========
B D                    Rabbit  ========
B D                Coelacanth  ========
B D                   Gorilla  NNNNNNNN
B D                     Shrew  ========
              Golden hamster  ========
B D              Green monkey  ========
B D                    Baboon  ========
B D       Crab-eating macaque  --------
B D                    Rhesus  ========
            Brush-tailed rat  ========
B D              Atlantic cod  ========
                 Spotted gar  ========
B D               Stickleback  ========
          Southern platyfish  ========
      Yellowbelly pufferfish  ========
B D                      Fugu  ========
B D                 Tetraodon  ========
B D                   Chicken  ========
  D              Mallard duck  ========
          Tibetan ground jay  ========
B D               Zebra finch  ========
B D                    Medaka  ========
         Pundamilia nyererei  ========
                 Zebra mbuna  ========
       Burton's mouthbreeder  ========
         Princess of Burundi  ========
B D              Nile tilapia  ========
  D            Painted turtle  ========
  D           Green seaturtle  ========
B D        American alligator  ========
  D             Scarlet macaw  ========
B D                   Opossum  ========
                  Chinchilla  ========
B D            Naked mole-rat  ========
      Lesser Egyptian jerboa  ========
  D               Rock pigeon  ========
  D       Collared flycatcher  ========
B D       Medium ground finch  ========
B D                    Lizard  ========
  D          Peregrine falcon  ========
  D              Saker falcon  ========
            Cape golden mole  ========
          Chinese tree shrew  ========
         Cape elephant shrew  ========
B D                  Platypus  ========
B D                   Manatee  --------
B D           Chinese hamster  ========
                Prairie vole  ========
B D                  Elephant  ========
B D                    Tenrec  ========
B D                       Cat  ========
B D                   Megabat  ========
B D                  Bushbaby  ========
B D                       Pig  ========
  D  Chinese softshell turtle  ========
B D                   Ferret   ========
B D                   Dolphin  ========
B D                       Rat  ========
B D                     Mouse  ========
B D                     Panda  ========
               Domestic goat  ========
B D                     Sheep  ========
            Tibetan antelope  ========
             Star-nosed mole  ========
              Bactrian camel  ========
B D                    Alpaca  ========
              Pacific walrus  ========
            Black flying-fox  ========
B D          White rhinoceros  ========
B D                     Horse  ========
B D                 Armadillo  --------
                Weddell seal  ========
        David's myotis (bat)  ========
               Big brown bat  ========
  D          Little brown bat  ========
B D                  Marmoset  ========
B D                       Dog  ========
B D                       Cow  ========
                Killer whale  ========

Inserts between block 10 and 11 in window
                    Aardvark 10162bp

Alignment block 11 of 249 in window, 56691044 - 56691058, 15 bps 
B D                     Human  gggcgcggtgtctca
B D                     Chimp  gggcgcggtgtctca
B D                 Orangutan  gggcacagtgtctca
B D                    Gibbon  gggcgcggtgtctca
B D                  Squirrel  gggcacaatggtata
B D                  Hedgehog  ===============
B D                Guinea pig  ===============
B D                      Pika  ===============
B D                    Rabbit  ===============
B D                Coelacanth  ===============
B D                   Gorilla  NNNNNNNNNNNNNNN
B D                     Shrew  ===============
              Golden hamster  ===============
B D              Green monkey  ===============
B D                    Baboon  ===============
B D       Crab-eating macaque  ---------------
B D                    Rhesus  ===============
            Brush-tailed rat  ===============
B D              Atlantic cod  ===============
                 Spotted gar  ===============
B D               Stickleback  ===============
          Southern platyfish  ===============
      Yellowbelly pufferfish  ===============
B D                      Fugu  ===============
B D                 Tetraodon  ===============
B D                   Chicken  ===============
  D              Mallard duck  ===============
          Tibetan ground jay  ===============
B D               Zebra finch  ===============
B D                    Medaka  ===============
         Pundamilia nyererei  ===============
                 Zebra mbuna  ===============
       Burton's mouthbreeder  ===============
         Princess of Burundi  ===============
B D              Nile tilapia  ===============
  D            Painted turtle  ===============
  D           Green seaturtle  ===============
B D        American alligator  ===============
  D             Scarlet macaw  ===============
B D                   Opossum  ===============
                  Chinchilla  ===============
B D            Naked mole-rat  ===============
      Lesser Egyptian jerboa  ===============
  D               Rock pigeon  ===============
  D       Collared flycatcher  ===============
B D       Medium ground finch  ===============
B D                    Lizard  ===============
  D          Peregrine falcon  ===============
  D              Saker falcon  ===============
            Cape golden mole  ===============
          Chinese tree shrew  ===============
         Cape elephant shrew  ===============
B D                  Platypus  ===============
B D                   Manatee  ---------------
B D           Chinese hamster  ===============
                Prairie vole  ===============
                    Aardvark  ===============
B D                  Elephant  ===============
B D                    Tenrec  ===============
B D                       Cat  ===============
B D                   Megabat  ===============
B D                  Bushbaby  ===============
B D                       Pig  ===============
  D  Chinese softshell turtle  ===============
B D                   Ferret   ===============
B D                   Dolphin  ===============
B D                       Rat  ===============
B D                     Mouse  ===============
B D                     Panda  ===============
               Domestic goat  ===============
B D                     Sheep  ===============
            Tibetan antelope  ===============
             Star-nosed mole  ===============
              Bactrian camel  ===============
B D                    Alpaca  ===============
              Pacific walrus  ===============
            Black flying-fox  ===============
B D          White rhinoceros  ===============
B D                     Horse  ===============
B D                 Armadillo  ---------------
                Weddell seal  ===============
        David's myotis (bat)  ===============
               Big brown bat  ===============
  D          Little brown bat  ===============
B D                  Marmoset  ===============
B D                       Dog  ===============
B D                       Cow  ===============
                Killer whale  ===============

Alignment block 12 of 249 in window, 56691059 - 56691166, 108 bps 
B D                     Human  ------tgcctgt--aatcccagcactttgggaggccaaggcaggtggatcacctgaggtcaggagctca
B D                     Chimp  ------tgcctgt--tatcccagcactttgggaggccaaggcaggtggatcacctgaggtcaggagctca
B D                 Orangutan  ------cgcctgt--aatcccagcactttgggaggccaaggcaggtggatcacctgaggtcaggagctca
B D                    Gibbon  ------cgcctat--aatcccagcactttgggaggccaaggcaggtggatcacctgaggtcaggagctca
B D                    Baboon  ------cacttgt--agtccaagctacttgagaggctgaggtgggaggattgcttgagcccaagagttca
B D                  Squirrel  tatctacccctgtgaaatcccagagactcaggaggctgaggcaggaggatcac----------aaggtaa
B D                  Hedgehog  ======================================================================
B D                Guinea pig  ======================================================================
B D                      Pika  ======================================================================
B D                    Rabbit  ======================================================================
B D                Coelacanth  ======================================================================
B D                   Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                     Shrew  ======================================================================
              Golden hamster  ======================================================================
B D              Green monkey  ======================================================================
B D       Crab-eating macaque  ----------------------------------------------------------------------
B D                    Rhesus  ======================================================================
            Brush-tailed rat  ======================================================================
B D              Atlantic cod  ======================================================================
                 Spotted gar  ======================================================================
B D               Stickleback  ======================================================================
          Southern platyfish  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                      Fugu  ======================================================================
B D                 Tetraodon  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
B D                    Medaka  ======================================================================
         Pundamilia nyererei  ======================================================================
                 Zebra mbuna  ======================================================================
       Burton's mouthbreeder  ======================================================================
         Princess of Burundi  ======================================================================
B D              Nile tilapia  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D        American alligator  ======================================================================
  D             Scarlet macaw  ======================================================================
B D                   Opossum  ======================================================================
                  Chinchilla  ======================================================================
B D            Naked mole-rat  ======================================================================
      Lesser Egyptian jerboa  ======================================================================
  D               Rock pigeon  ======================================================================
  D       Collared flycatcher  ======================================================================
B D       Medium ground finch  ======================================================================
B D                    Lizard  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
            Cape golden mole  ======================================================================
          Chinese tree shrew  ======================================================================
         Cape elephant shrew  ======================================================================
B D                  Platypus  ======================================================================
B D                   Manatee  ----------------------------------------------------------------------
B D           Chinese hamster  ======================================================================
                Prairie vole  ======================================================================
                    Aardvark  ======================================================================
B D                  Elephant  ======================================================================
B D                    Tenrec  ======================================================================
B D                       Cat  ======================================================================
B D                   Megabat  ======================================================================
B D                  Bushbaby  ======================================================================
B D                       Pig  ======================================================================
  D  Chinese softshell turtle  ======================================================================
B D                   Ferret   ======================================================================
B D                   Dolphin  ======================================================================
B D                       Rat  ======================================================================
B D                     Mouse  ======================================================================
B D                     Panda  ======================================================================
               Domestic goat  ======================================================================
B D                     Sheep  ======================================================================
            Tibetan antelope  ======================================================================
             Star-nosed mole  ======================================================================
              Bactrian camel  ======================================================================
B D                    Alpaca  ======================================================================
              Pacific walrus  ======================================================================
            Black flying-fox  ======================================================================
B D          White rhinoceros  ======================================================================
B D                     Horse  ======================================================================
B D                 Armadillo  ----------------------------------------------------------------------
                Weddell seal  ======================================================================
        David's myotis (bat)  ======================================================================
               Big brown bat  ======================================================================
  D          Little brown bat  ======================================================================
B D                  Marmoset  ======================================================================
B D                       Dog  ======================================================================
B D                       Cow  ======================================================================
                Killer whale  ======================================================================

                        Human  agaccagcctggccaacatggcaaaaccccatctctactaaaaata
                        Chimp  agaccagcctggccaacatggcaaaaccccatctctactaaaaata
                    Orangutan  agaccagcctggccaacgtggcaaaaccccatctctactaaaaata
                       Gibbon  agaccagcctggccaacatggcaaaaccccatctctactaaaaata
                       Baboon  agtccagcctgagcaatgtagggagaccctgtctttga-aaaaata
                     Squirrel  acaccagcatggacaatttagtgagaccttgtctc----gaaa---
                     Hedgehog  ==============================================
                   Guinea pig  ==============================================
                         Pika  ==============================================
                       Rabbit  ==============================================
                   Coelacanth  ==============================================
                      Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                        Shrew  ==============================================
               Golden hamster  ==============================================
                 Green monkey  ==============================================
          Crab-eating macaque  ----------------------------------------------
                       Rhesus  ==============================================
             Brush-tailed rat  ==============================================
                 Atlantic cod  ==============================================
                  Spotted gar  ==============================================
                  Stickleback  ==============================================
           Southern platyfish  ==============================================
       Yellowbelly pufferfish  ==============================================
                         Fugu  ==============================================
                    Tetraodon  ==============================================
                      Chicken  ==============================================
                 Mallard duck  ==============================================
           Tibetan ground jay  ==============================================
                  Zebra finch  ==============================================
                       Medaka  ==============================================
          Pundamilia nyererei  ==============================================
                  Zebra mbuna  ==============================================
        Burton's mouthbreeder  ==============================================
          Princess of Burundi  ==============================================
                 Nile tilapia  ==============================================
               Painted turtle  ==============================================
              Green seaturtle  ==============================================
           American alligator  ==============================================
                Scarlet macaw  ==============================================
                      Opossum  ==============================================
                   Chinchilla  ==============================================
               Naked mole-rat  ==============================================
       Lesser Egyptian jerboa  ==============================================
                  Rock pigeon  ==============================================
          Collared flycatcher  ==============================================
          Medium ground finch  ==============================================
                       Lizard  ==============================================
             Peregrine falcon  ==============================================
                 Saker falcon  ==============================================
             Cape golden mole  ==============================================
           Chinese tree shrew  ==============================================
          Cape elephant shrew  ==============================================
                     Platypus  ==============================================
                      Manatee  ----------------------------------------------
              Chinese hamster  ==============================================
                 Prairie vole  ==============================================
                     Aardvark  ==============================================
                     Elephant  ==============================================
                       Tenrec  ==============================================
                          Cat  ==============================================
                      Megabat  ==============================================
                     Bushbaby  ==============================================
                          Pig  ==============================================
     Chinese softshell turtle  ==============================================
                      Ferret   ==============================================
                      Dolphin  ==============================================
                          Rat  ==============================================
                        Mouse  ==============================================
                        Panda  ==============================================
                Domestic goat  ==============================================
                        Sheep  ==============================================
             Tibetan antelope  ==============================================
              Star-nosed mole  ==============================================
               Bactrian camel  ==============================================
                       Alpaca  ==============================================
               Pacific walrus  ==============================================
             Black flying-fox  ==============================================
             White rhinoceros  ==============================================
                        Horse  ==============================================
                    Armadillo  ----------------------------------------------
                 Weddell seal  ==============================================
         David's myotis (bat)  ==============================================
                Big brown bat  ==============================================
             Little brown bat  ==============================================
                     Marmoset  ==============================================
                          Dog  ==============================================
                          Cow  ==============================================
                 Killer whale  ==============================================

Inserts between block 12 and 13 in window
B D                   Baboon 2607bp

Alignment block 13 of 249 in window, 56691167 - 56691181, 15 bps 
B D                     Human  caaaaattagctggg
B D                     Chimp  caaaaattagctggg
B D                 Orangutan  caaaaattagctgtg
B D                    Gibbon  caaaaattagttggg
B D                  Squirrel  taaaaatggtctggg
B D                  Hedgehog  ===============
B D                Guinea pig  ===============
B D                      Pika  ===============
B D                    Rabbit  ===============
B D                Coelacanth  ===============
B D                   Gorilla  NNNNNNNNNNNNNNN
B D                     Shrew  ===============
              Golden hamster  ===============
B D              Green monkey  ===============
B D                    Baboon  ===============
B D       Crab-eating macaque  ---------------
B D                    Rhesus  ===============
            Brush-tailed rat  ===============
B D              Atlantic cod  ===============
                 Spotted gar  ===============
B D               Stickleback  ===============
          Southern platyfish  ===============
      Yellowbelly pufferfish  ===============
B D                      Fugu  ===============
B D                 Tetraodon  ===============
B D                   Chicken  ===============
  D              Mallard duck  ===============
          Tibetan ground jay  ===============
B D               Zebra finch  ===============
B D                    Medaka  ===============
         Pundamilia nyererei  ===============
                 Zebra mbuna  ===============
       Burton's mouthbreeder  ===============
         Princess of Burundi  ===============
B D              Nile tilapia  ===============
  D            Painted turtle  ===============
  D           Green seaturtle  ===============
B D        American alligator  ===============
  D             Scarlet macaw  ===============
B D                   Opossum  ===============
                  Chinchilla  ===============
B D            Naked mole-rat  ===============
      Lesser Egyptian jerboa  ===============
  D               Rock pigeon  ===============
  D       Collared flycatcher  ===============
B D       Medium ground finch  ===============
B D                    Lizard  ===============
  D          Peregrine falcon  ===============
  D              Saker falcon  ===============
            Cape golden mole  ===============
          Chinese tree shrew  ===============
         Cape elephant shrew  ===============
B D                  Platypus  ===============
B D                   Manatee  ---------------
B D           Chinese hamster  ===============
                Prairie vole  ===============
                    Aardvark  ===============
B D                  Elephant  ===============
B D                    Tenrec  ===============
B D                       Cat  ===============
B D                   Megabat  ===============
B D                  Bushbaby  ===============
B D                       Pig  ===============
  D  Chinese softshell turtle  ===============
B D                   Ferret   ===============
B D                   Dolphin  ===============
B D                       Rat  ===============
B D                     Mouse  ===============
B D                     Panda  ===============
               Domestic goat  ===============
B D                     Sheep  ===============
            Tibetan antelope  ===============
             Star-nosed mole  ===============
              Bactrian camel  ===============
B D                    Alpaca  ===============
              Pacific walrus  ===============
            Black flying-fox  ===============
B D          White rhinoceros  ===============
B D                     Horse  ===============
B D                 Armadillo  ---------------
                Weddell seal  ===============
        David's myotis (bat)  ===============
               Big brown bat  ===============
  D          Little brown bat  ===============
B D                  Marmoset  ===============
B D                       Dog  ===============
B D                       Cow  ===============
                Killer whale  ===============

Inserts between block 13 and 14 in window
B D                 Squirrel 5297bp

Alignment block 14 of 249 in window, 56691182 - 56691447, 266 bps 
B D                     Human  cgtggtggcaggcgcctgtaatcccagctacttgggaggcggaggc---agaattgcttgaacctgggcg
B D                     Chimp  cgtggtggcaggcgcctgtaatcccagctacttgggaggctgaggtagaagaattgcttgaacctgggcg
B D                 Orangutan  cgtggtggcaggtgcctctaatcccagctacttgggaggctgaggcagaagaattgcttgaacctgggag
B D                    Gibbon  tgtggtggcaggcgcctgtaatcccagctacttgggaggctgaggcagaagaattgcttgaacctgggag
B D                  Hedgehog  ======================================================================
B D                Guinea pig  ======================================================================
B D                      Pika  ======================================================================
B D                    Rabbit  ======================================================================
B D                Coelacanth  ======================================================================
B D                   Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                     Shrew  ======================================================================
              Golden hamster  ======================================================================
B D              Green monkey  ======================================================================
B D                    Baboon  ======================================================================
B D       Crab-eating macaque  ----------------------------------------------------------------------
B D                    Rhesus  ======================================================================
            Brush-tailed rat  ======================================================================
B D              Atlantic cod  ======================================================================
                 Spotted gar  ======================================================================
B D               Stickleback  ======================================================================
          Southern platyfish  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                      Fugu  ======================================================================
B D                 Tetraodon  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
B D                    Medaka  ======================================================================
         Pundamilia nyererei  ======================================================================
                 Zebra mbuna  ======================================================================
       Burton's mouthbreeder  ======================================================================
         Princess of Burundi  ======================================================================
B D              Nile tilapia  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D        American alligator  ======================================================================
  D             Scarlet macaw  ======================================================================
B D                   Opossum  ======================================================================
                  Chinchilla  ======================================================================
B D            Naked mole-rat  ======================================================================
      Lesser Egyptian jerboa  ======================================================================
  D               Rock pigeon  ======================================================================
  D       Collared flycatcher  ======================================================================
B D       Medium ground finch  ======================================================================
B D                    Lizard  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
            Cape golden mole  ======================================================================
          Chinese tree shrew  ======================================================================
         Cape elephant shrew  ======================================================================
B D                  Platypus  ======================================================================
B D                   Manatee  ----------------------------------------------------------------------
B D           Chinese hamster  ======================================================================
                Prairie vole  ======================================================================
                    Aardvark  ======================================================================
B D                  Elephant  ======================================================================
B D                    Tenrec  ======================================================================
B D                       Cat  ======================================================================
B D                   Megabat  ======================================================================
B D                  Bushbaby  ======================================================================
B D                       Pig  ======================================================================
  D  Chinese softshell turtle  ======================================================================
B D                   Ferret   ======================================================================
B D                   Dolphin  ======================================================================
B D                       Rat  ======================================================================
B D                     Mouse  ======================================================================
B D                     Panda  ======================================================================
               Domestic goat  ======================================================================
B D                     Sheep  ======================================================================
            Tibetan antelope  ======================================================================
             Star-nosed mole  ======================================================================
              Bactrian camel  ======================================================================
B D                    Alpaca  ======================================================================
              Pacific walrus  ======================================================================
            Black flying-fox  ======================================================================
B D          White rhinoceros  ======================================================================
B D                     Horse  ======================================================================
B D                  Squirrel  ======================================================================
B D                 Armadillo  ----------------------------------------------------------------------
                Weddell seal  ======================================================================
        David's myotis (bat)  ======================================================================
               Big brown bat  ======================================================================
  D          Little brown bat  ======================================================================
B D                  Marmoset  ======================================================================
B D                       Dog  ======================================================================
B D                       Cow  ======================================================================
                Killer whale  ======================================================================

                        Human  gcagaggttgcagtgagccgagatcatgccattgcactccagcctgggtgacaagagcgaaactccatct
                        Chimp  gcagaggttgcagtgagccgagatcatgccattgcactccagcctgggtgacaagagggaaactccattt
                    Orangutan  gcagaggttgcagtgagctgagatcatgccattgcactccagcctgggcgacaagagcgaaactccgtct
                       Gibbon  gcagatgttgcagtgagccgagatcatgccattgcactccagcctgggcgac--gagcgaaactccgttt
                     Hedgehog  ======================================================================
                   Guinea pig  ======================================================================
                         Pika  ======================================================================
                       Rabbit  ======================================================================
                   Coelacanth  ======================================================================
                      Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                        Shrew  ======================================================================
               Golden hamster  ======================================================================
                 Green monkey  ======================================================================
                       Baboon  ======================================================================
          Crab-eating macaque  ----------------------------------------------------------------------
                       Rhesus  ======================================================================
             Brush-tailed rat  ======================================================================
                 Atlantic cod  ======================================================================
                  Spotted gar  ======================================================================
                  Stickleback  ======================================================================
           Southern platyfish  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                         Fugu  ======================================================================
                    Tetraodon  ======================================================================
                      Chicken  ======================================================================
                 Mallard duck  ======================================================================
           Tibetan ground jay  ======================================================================
                  Zebra finch  ======================================================================
                       Medaka  ======================================================================
          Pundamilia nyererei  ======================================================================
                  Zebra mbuna  ======================================================================
        Burton's mouthbreeder  ======================================================================
          Princess of Burundi  ======================================================================
                 Nile tilapia  ======================================================================
               Painted turtle  ======================================================================
              Green seaturtle  ======================================================================
           American alligator  ======================================================================
                Scarlet macaw  ======================================================================
                      Opossum  ======================================================================
                   Chinchilla  ======================================================================
               Naked mole-rat  ======================================================================
       Lesser Egyptian jerboa  ======================================================================
                  Rock pigeon  ======================================================================
          Collared flycatcher  ======================================================================
          Medium ground finch  ======================================================================
                       Lizard  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
             Cape golden mole  ======================================================================
           Chinese tree shrew  ======================================================================
          Cape elephant shrew  ======================================================================
                     Platypus  ======================================================================
                      Manatee  ----------------------------------------------------------------------
              Chinese hamster  ======================================================================
                 Prairie vole  ======================================================================
                     Aardvark  ======================================================================
                     Elephant  ======================================================================
                       Tenrec  ======================================================================
                          Cat  ======================================================================
                      Megabat  ======================================================================
                     Bushbaby  ======================================================================
                          Pig  ======================================================================
     Chinese softshell turtle  ======================================================================
                      Ferret   ======================================================================
                      Dolphin  ======================================================================
                          Rat  ======================================================================
                        Mouse  ======================================================================
                        Panda  ======================================================================
                Domestic goat  ======================================================================
                        Sheep  ======================================================================
             Tibetan antelope  ======================================================================
              Star-nosed mole  ======================================================================
               Bactrian camel  ======================================================================
                       Alpaca  ======================================================================
               Pacific walrus  ======================================================================
             Black flying-fox  ======================================================================
             White rhinoceros  ======================================================================
                        Horse  ======================================================================
                     Squirrel  ======================================================================
                    Armadillo  ----------------------------------------------------------------------
                 Weddell seal  ======================================================================
         David's myotis (bat)  ======================================================================
                Big brown bat  ======================================================================
             Little brown bat  ======================================================================
                     Marmoset  ======================================================================
                          Dog  ======================================================================
                          Cow  ======================================================================
                 Killer whale  ======================================================================

                        Human  caaaaaaaaaaaaaaaaaaaaaaaaagacggggcacgcgtggctcacgcctgtaatcccagcactttggg
                        Chimp  c----aaaaaaaaaaaaaaaaaaaaagacggggcgcgcgtggctcacgcctgtaatcccagcactttggg
                    Orangutan  c------caaaaaaaaaacaaaaaacggtgaggcgcgcatggctcacgcctgtaatcccagcactttggg
                       Gibbon  c-cgaaaaaaaaaaaaaaaaaaaaaaggcggggcgcgcgtggctcacgcctgtaatcccagcaccttggg
                     Hedgehog  ======================================================================
                   Guinea pig  ======================================================================
                         Pika  ======================================================================
                       Rabbit  ======================================================================
                   Coelacanth  ======================================================================
                      Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                        Shrew  ======================================================================
               Golden hamster  ======================================================================
                 Green monkey  ======================================================================
                       Baboon  ======================================================================
          Crab-eating macaque  ----------------------------------------------------------------------
                       Rhesus  ======================================================================
             Brush-tailed rat  ======================================================================
                 Atlantic cod  ======================================================================
                  Spotted gar  ======================================================================
                  Stickleback  ======================================================================
           Southern platyfish  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                         Fugu  ======================================================================
                    Tetraodon  ======================================================================
                      Chicken  ======================================================================
                 Mallard duck  ======================================================================
           Tibetan ground jay  ======================================================================
                  Zebra finch  ======================================================================
                       Medaka  ======================================================================
          Pundamilia nyererei  ======================================================================
                  Zebra mbuna  ======================================================================
        Burton's mouthbreeder  ======================================================================
          Princess of Burundi  ======================================================================
                 Nile tilapia  ======================================================================
               Painted turtle  ======================================================================
              Green seaturtle  ======================================================================
           American alligator  ======================================================================
                Scarlet macaw  ======================================================================
                      Opossum  ======================================================================
                   Chinchilla  ======================================================================
               Naked mole-rat  ======================================================================
       Lesser Egyptian jerboa  ======================================================================
                  Rock pigeon  ======================================================================
          Collared flycatcher  ======================================================================
          Medium ground finch  ======================================================================
                       Lizard  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
             Cape golden mole  ======================================================================
           Chinese tree shrew  ======================================================================
          Cape elephant shrew  ======================================================================
                     Platypus  ======================================================================
                      Manatee  ----------------------------------------------------------------------
              Chinese hamster  ======================================================================
                 Prairie vole  ======================================================================
                     Aardvark  ======================================================================
                     Elephant  ======================================================================
                       Tenrec  ======================================================================
                          Cat  ======================================================================
                      Megabat  ======================================================================
                     Bushbaby  ======================================================================
                          Pig  ======================================================================
     Chinese softshell turtle  ======================================================================
                      Ferret   ======================================================================
                      Dolphin  ======================================================================
                          Rat  ======================================================================
                        Mouse  ======================================================================
                        Panda  ======================================================================
                Domestic goat  ======================================================================
                        Sheep  ======================================================================
             Tibetan antelope  ======================================================================
              Star-nosed mole  ======================================================================
               Bactrian camel  ======================================================================
                       Alpaca  ======================================================================
               Pacific walrus  ======================================================================
             Black flying-fox  ======================================================================
             White rhinoceros  ======================================================================
                        Horse  ======================================================================
                     Squirrel  ======================================================================
                    Armadillo  ----------------------------------------------------------------------
                 Weddell seal  ======================================================================
         David's myotis (bat)  ======================================================================
                Big brown bat  ======================================================================
             Little brown bat  ======================================================================
                     Marmoset  ======================================================================
                          Dog  ======================================================================
                          Cow  ======================================================================
                 Killer whale  ======================================================================

                        Human  aggctgagatgggtggatcatgaggtcaggagttcaagaccagcctggccaagacggtg
                        Chimp  aggctgagatgggtggatcatgaggtcaggagttcaagaccagcctggccaagatggtg
                    Orangutan  aggccgagacgggtggatcatgaggtcaggagttcaagaccagcctggccaagatggtg
                       Gibbon  aggccaagacgggtggatcatgaggtcaggagttcaagaccagcctggccaagatggtg
                     Hedgehog  ===========================================================
                   Guinea pig  ===========================================================
                         Pika  ===========================================================
                       Rabbit  ===========================================================
                   Coelacanth  ===========================================================
                      Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                        Shrew  ===========================================================
               Golden hamster  ===========================================================
                 Green monkey  ===========================================================
                       Baboon  ===========================================================
          Crab-eating macaque  -----------------------------------------------------------
                       Rhesus  ===========================================================
             Brush-tailed rat  ===========================================================
                 Atlantic cod  ===========================================================
                  Spotted gar  ===========================================================
                  Stickleback  ===========================================================
           Southern platyfish  ===========================================================
       Yellowbelly pufferfish  ===========================================================
                         Fugu  ===========================================================
                    Tetraodon  ===========================================================
                      Chicken  ===========================================================
                 Mallard duck  ===========================================================
           Tibetan ground jay  ===========================================================
                  Zebra finch  ===========================================================
                       Medaka  ===========================================================
          Pundamilia nyererei  ===========================================================
                  Zebra mbuna  ===========================================================
        Burton's mouthbreeder  ===========================================================
          Princess of Burundi  ===========================================================
                 Nile tilapia  ===========================================================
               Painted turtle  ===========================================================
              Green seaturtle  ===========================================================
           American alligator  ===========================================================
                Scarlet macaw  ===========================================================
                      Opossum  ===========================================================
                   Chinchilla  ===========================================================
               Naked mole-rat  ===========================================================
       Lesser Egyptian jerboa  ===========================================================
                  Rock pigeon  ===========================================================
          Collared flycatcher  ===========================================================
          Medium ground finch  ===========================================================
                       Lizard  ===========================================================
             Peregrine falcon  ===========================================================
                 Saker falcon  ===========================================================
             Cape golden mole  ===========================================================
           Chinese tree shrew  ===========================================================
          Cape elephant shrew  ===========================================================
                     Platypus  ===========================================================
                      Manatee  -----------------------------------------------------------
              Chinese hamster  ===========================================================
                 Prairie vole  ===========================================================
                     Aardvark  ===========================================================
                     Elephant  ===========================================================
                       Tenrec  ===========================================================
                          Cat  ===========================================================
                      Megabat  ===========================================================
                     Bushbaby  ===========================================================
                          Pig  ===========================================================
     Chinese softshell turtle  ===========================================================
                      Ferret   ===========================================================
                      Dolphin  ===========================================================
                          Rat  ===========================================================
                        Mouse  ===========================================================
                        Panda  ===========================================================
                Domestic goat  ===========================================================
                        Sheep  ===========================================================
             Tibetan antelope  ===========================================================
              Star-nosed mole  ===========================================================
               Bactrian camel  ===========================================================
                       Alpaca  ===========================================================
               Pacific walrus  ===========================================================
             Black flying-fox  ===========================================================
             White rhinoceros  ===========================================================
                        Horse  ===========================================================
                     Squirrel  ===========================================================
                    Armadillo  -----------------------------------------------------------
                 Weddell seal  ===========================================================
         David's myotis (bat)  ===========================================================
                Big brown bat  ===========================================================
             Little brown bat  ===========================================================
                     Marmoset  ===========================================================
                          Dog  ===========================================================
                          Cow  ===========================================================
                 Killer whale  ===========================================================

Inserts between block 14 and 15 in window
B D                    Chimp 12bp

Alignment block 15 of 249 in window, 56691448 - 56691456, 9 bps 
B D                     Human  aaaccctgt
B D                 Orangutan  aaaccccgt
B D                    Gibbon  aaaccccat
B D                  Hedgehog  =========
B D                Guinea pig  =========
B D                      Pika  =========
B D                    Rabbit  =========
B D                Coelacanth  =========
B D                   Gorilla  NNNNNNNNN
B D                     Shrew  =========
              Golden hamster  =========
B D              Green monkey  =========
B D                    Baboon  =========
B D       Crab-eating macaque  ---------
B D                    Rhesus  =========
            Brush-tailed rat  =========
B D              Atlantic cod  =========
                 Spotted gar  =========
B D               Stickleback  =========
          Southern platyfish  =========
      Yellowbelly pufferfish  =========
B D                      Fugu  =========
B D                 Tetraodon  =========
B D                   Chicken  =========
  D              Mallard duck  =========
          Tibetan ground jay  =========
B D               Zebra finch  =========
B D                    Medaka  =========
         Pundamilia nyererei  =========
                 Zebra mbuna  =========
       Burton's mouthbreeder  =========
         Princess of Burundi  =========
B D              Nile tilapia  =========
  D            Painted turtle  =========
  D           Green seaturtle  =========
B D        American alligator  =========
  D             Scarlet macaw  =========
B D                   Opossum  =========
                  Chinchilla  =========
B D            Naked mole-rat  =========
      Lesser Egyptian jerboa  =========
  D               Rock pigeon  =========
  D       Collared flycatcher  =========
B D       Medium ground finch  =========
B D                    Lizard  =========
  D          Peregrine falcon  =========
  D              Saker falcon  =========
            Cape golden mole  =========
          Chinese tree shrew  =========
         Cape elephant shrew  =========
B D                  Platypus  =========
B D                   Manatee  ---------
B D           Chinese hamster  =========
                Prairie vole  =========
                    Aardvark  =========
B D                  Elephant  =========
B D                    Tenrec  =========
B D                       Cat  =========
B D                   Megabat  =========
B D                  Bushbaby  =========
B D                       Pig  =========
  D  Chinese softshell turtle  =========
B D                   Ferret   =========
B D                   Dolphin  =========
B D                       Rat  =========
B D                     Mouse  =========
B D                     Panda  =========
               Domestic goat  =========
B D                     Sheep  =========
            Tibetan antelope  =========
             Star-nosed mole  =========
              Bactrian camel  =========
B D                    Alpaca  =========
              Pacific walrus  =========
            Black flying-fox  =========
B D          White rhinoceros  =========
B D                     Horse  =========
B D                  Squirrel  =========
B D                 Armadillo  ---------
                Weddell seal  =========
        David's myotis (bat)  =========
               Big brown bat  =========
  D          Little brown bat  =========
B D                  Marmoset  =========
B D                       Dog  =========
B D                       Cow  =========
                Killer whale  =========
B D                     Chimp  =========

Alignment block 16 of 249 in window, 56691457 - 56691486, 30 bps 
B D                     Human  ctctactaaaaatacaaaaattagccaggc
B D                     Chimp  ctctactaaaaatacaaaaattagccaggc
B D                 Orangutan  ctctactaaaaatacaaaaattagccaggc
B D                    Gibbon  ctctgctaaaaatactaaaattagccaggg
B D                  Hedgehog  ==============================
B D                Guinea pig  ==============================
B D                      Pika  ==============================
B D                    Rabbit  ==============================
B D                Coelacanth  ==============================
B D                   Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                     Shrew  ==============================
              Golden hamster  ==============================
B D              Green monkey  ==============================
B D                    Baboon  ==============================
B D       Crab-eating macaque  ------------------------------
B D                    Rhesus  ==============================
            Brush-tailed rat  ==============================
B D              Atlantic cod  ==============================
                 Spotted gar  ==============================
B D               Stickleback  ==============================
          Southern platyfish  ==============================
      Yellowbelly pufferfish  ==============================
B D                      Fugu  ==============================
B D                 Tetraodon  ==============================
B D                   Chicken  ==============================
  D              Mallard duck  ==============================
          Tibetan ground jay  ==============================
B D               Zebra finch  ==============================
B D                    Medaka  ==============================
         Pundamilia nyererei  ==============================
                 Zebra mbuna  ==============================
       Burton's mouthbreeder  ==============================
         Princess of Burundi  ==============================
B D              Nile tilapia  ==============================
  D            Painted turtle  ==============================
  D           Green seaturtle  ==============================
B D        American alligator  ==============================
  D             Scarlet macaw  ==============================
B D                   Opossum  ==============================
                  Chinchilla  ==============================
B D            Naked mole-rat  ==============================
      Lesser Egyptian jerboa  ==============================
  D               Rock pigeon  ==============================
  D       Collared flycatcher  ==============================
B D       Medium ground finch  ==============================
B D                    Lizard  ==============================
  D          Peregrine falcon  ==============================
  D              Saker falcon  ==============================
            Cape golden mole  ==============================
          Chinese tree shrew  ==============================
         Cape elephant shrew  ==============================
B D                  Platypus  ==============================
B D                   Manatee  ------------------------------
B D           Chinese hamster  ==============================
                Prairie vole  ==============================
                    Aardvark  ==============================
B D                  Elephant  ==============================
B D                    Tenrec  ==============================
B D                       Cat  ==============================
B D                   Megabat  ==============================
B D                  Bushbaby  ==============================
B D                       Pig  ==============================
  D  Chinese softshell turtle  ==============================
B D                   Ferret   ==============================
B D                   Dolphin  ==============================
B D                       Rat  ==============================
B D                     Mouse  ==============================
B D                     Panda  ==============================
               Domestic goat  ==============================
B D                     Sheep  ==============================
            Tibetan antelope  ==============================
             Star-nosed mole  ==============================
              Bactrian camel  ==============================
B D                    Alpaca  ==============================
              Pacific walrus  ==============================
            Black flying-fox  ==============================
B D          White rhinoceros  ==============================
B D                     Horse  ==============================
B D                  Squirrel  ==============================
B D                 Armadillo  ------------------------------
                Weddell seal  ==============================
        David's myotis (bat)  ==============================
               Big brown bat  ==============================
  D          Little brown bat  ==============================
B D                  Marmoset  ==============================
B D                       Dog  ==============================
B D                       Cow  ==============================
                Killer whale  ==============================

Inserts between block 16 and 17 in window
B D                    Chimp 4141bp

Alignment block 17 of 249 in window, 56691487 - 56691599, 113 bps 
B D                     Human  ttggtggtgggtgcttgtaatcccagctacttgggaggctgtggcagaacctgtgaggtggaggtggcag
B D                 Orangutan  gtggtggtgggcgtttgtaatcccagctactcgggaggctgtggcagaacctgtgagatggaggtggcag
B D                    Gibbon  gtggtgatgggtgcttgtaatcccagctattcgggaggctgtggcagaacccgtgaggtggaggtggcag
B D                  Hedgehog  ======================================================================
B D                Guinea pig  ======================================================================
B D                      Pika  ======================================================================
B D                    Rabbit  ======================================================================
B D                Coelacanth  ======================================================================
B D                   Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                     Shrew  ======================================================================
              Golden hamster  ======================================================================
B D              Green monkey  ======================================================================
B D                    Baboon  ======================================================================
B D       Crab-eating macaque  ----------------------------------------------------------------------
B D                    Rhesus  ======================================================================
            Brush-tailed rat  ======================================================================
B D              Atlantic cod  ======================================================================
                 Spotted gar  ======================================================================
B D               Stickleback  ======================================================================
          Southern platyfish  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                      Fugu  ======================================================================
B D                 Tetraodon  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
B D                    Medaka  ======================================================================
         Pundamilia nyererei  ======================================================================
                 Zebra mbuna  ======================================================================
       Burton's mouthbreeder  ======================================================================
         Princess of Burundi  ======================================================================
B D              Nile tilapia  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D        American alligator  ======================================================================
  D             Scarlet macaw  ======================================================================
B D                   Opossum  ======================================================================
                  Chinchilla  ======================================================================
B D            Naked mole-rat  ======================================================================
      Lesser Egyptian jerboa  ======================================================================
  D               Rock pigeon  ======================================================================
  D       Collared flycatcher  ======================================================================
B D       Medium ground finch  ======================================================================
B D                    Lizard  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
            Cape golden mole  ======================================================================
          Chinese tree shrew  ======================================================================
         Cape elephant shrew  ======================================================================
B D                  Platypus  ======================================================================
B D                   Manatee  ----------------------------------------------------------------------
B D           Chinese hamster  ======================================================================
                Prairie vole  ======================================================================
                    Aardvark  ======================================================================
B D                  Elephant  ======================================================================
B D                    Tenrec  ======================================================================
B D                       Cat  ======================================================================
B D                   Megabat  ======================================================================
B D                  Bushbaby  ======================================================================
B D                       Pig  ======================================================================
  D  Chinese softshell turtle  ======================================================================
B D                   Ferret   ======================================================================
B D                   Dolphin  ======================================================================
B D                       Rat  ======================================================================
B D                     Mouse  ======================================================================
B D                     Panda  ======================================================================
               Domestic goat  ======================================================================
B D                     Sheep  ======================================================================
            Tibetan antelope  ======================================================================
             Star-nosed mole  ======================================================================
              Bactrian camel  ======================================================================
B D                    Alpaca  ======================================================================
              Pacific walrus  ======================================================================
            Black flying-fox  ======================================================================
B D          White rhinoceros  ======================================================================
B D                     Horse  ======================================================================
B D                  Squirrel  ======================================================================
B D                 Armadillo  ----------------------------------------------------------------------
                Weddell seal  ======================================================================
        David's myotis (bat)  ======================================================================
               Big brown bat  ======================================================================
  D          Little brown bat  ======================================================================
B D                  Marmoset  ======================================================================
B D                       Dog  ======================================================================
B D                       Cow  ======================================================================
                Killer whale  ======================================================================
B D                     Chimp  ======================================================================

                        Human  tgagccgagatc-tccccactgcactccagcctgggtgacgaga
                    Orangutan  tgagctgagatcttccccactgaactccagcctgggtgacgaga
                       Gibbon  tgagccgagatc-tccccactgcactccagcctgggtgacaaga
                     Hedgehog  ============================================
                   Guinea pig  ============================================
                         Pika  ============================================
                       Rabbit  ============================================
                   Coelacanth  ============================================
                      Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                        Shrew  ============================================
               Golden hamster  ============================================
                 Green monkey  ============================================
                       Baboon  ============================================
          Crab-eating macaque  --------------------------------------------
                       Rhesus  ============================================
             Brush-tailed rat  ============================================
                 Atlantic cod  ============================================
                  Spotted gar  ============================================
                  Stickleback  ============================================
           Southern platyfish  ============================================
       Yellowbelly pufferfish  ============================================
                         Fugu  ============================================
                    Tetraodon  ============================================
                      Chicken  ============================================
                 Mallard duck  ============================================
           Tibetan ground jay  ============================================
                  Zebra finch  ============================================
                       Medaka  ============================================
          Pundamilia nyererei  ============================================
                  Zebra mbuna  ============================================
        Burton's mouthbreeder  ============================================
          Princess of Burundi  ============================================
                 Nile tilapia  ============================================
               Painted turtle  ============================================
              Green seaturtle  ============================================
           American alligator  ============================================
                Scarlet macaw  ============================================
                      Opossum  ============================================
                   Chinchilla  ============================================
               Naked mole-rat  ============================================
       Lesser Egyptian jerboa  ============================================
                  Rock pigeon  ============================================
          Collared flycatcher  ============================================
          Medium ground finch  ============================================
                       Lizard  ============================================
             Peregrine falcon  ============================================
                 Saker falcon  ============================================
             Cape golden mole  ============================================
           Chinese tree shrew  ============================================
          Cape elephant shrew  ============================================
                     Platypus  ============================================
                      Manatee  --------------------------------------------
              Chinese hamster  ============================================
                 Prairie vole  ============================================
                     Aardvark  ============================================
                     Elephant  ============================================
                       Tenrec  ============================================
                          Cat  ============================================
                      Megabat  ============================================
                     Bushbaby  ============================================
                          Pig  ============================================
     Chinese softshell turtle  ============================================
                      Ferret   ============================================
                      Dolphin  ============================================
                          Rat  ============================================
                        Mouse  ============================================
                        Panda  ============================================
                Domestic goat  ============================================
                        Sheep  ============================================
             Tibetan antelope  ============================================
              Star-nosed mole  ============================================
               Bactrian camel  ============================================
                       Alpaca  ============================================
               Pacific walrus  ============================================
             Black flying-fox  ============================================
             White rhinoceros  ============================================
                        Horse  ============================================
                     Squirrel  ============================================
                    Armadillo  --------------------------------------------
                 Weddell seal  ============================================
         David's myotis (bat)  ============================================
                Big brown bat  ============================================
             Little brown bat  ============================================
                     Marmoset  ============================================
                          Dog  ============================================
                          Cow  ============================================
                 Killer whale  ============================================
                        Chimp  ============================================

Alignment block 18 of 249 in window, 56691600 - 56691610, 11 bps 
B D                     Human  ctctgtctc--aa
B D                 Orangutan  ctccgtctc---a
B D                    Gibbon  ctccgtctc--ga
B D       Crab-eating macaque  ttctgtctcaaaa
B D                  Hedgehog  =============
B D                Guinea pig  =============
B D                      Pika  =============
B D                    Rabbit  =============
B D                Coelacanth  =============
B D                   Gorilla  NNNNNNNNNNNNN
B D                     Shrew  =============
              Golden hamster  =============
B D              Green monkey  =============
B D                    Baboon  =============
B D                    Rhesus  =============
            Brush-tailed rat  =============
B D              Atlantic cod  =============
                 Spotted gar  =============
B D               Stickleback  =============
          Southern platyfish  =============
      Yellowbelly pufferfish  =============
B D                      Fugu  =============
B D                 Tetraodon  =============
B D                   Chicken  =============
  D              Mallard duck  =============
          Tibetan ground jay  =============
B D               Zebra finch  =============
B D                    Medaka  =============
         Pundamilia nyererei  =============
                 Zebra mbuna  =============
       Burton's mouthbreeder  =============
         Princess of Burundi  =============
B D              Nile tilapia  =============
  D            Painted turtle  =============
  D           Green seaturtle  =============
B D        American alligator  =============
  D             Scarlet macaw  =============
B D                   Opossum  =============
                  Chinchilla  =============
B D            Naked mole-rat  =============
      Lesser Egyptian jerboa  =============
  D               Rock pigeon  =============
  D       Collared flycatcher  =============
B D       Medium ground finch  =============
B D                    Lizard  =============
  D          Peregrine falcon  =============
  D              Saker falcon  =============
            Cape golden mole  =============
          Chinese tree shrew  =============
         Cape elephant shrew  =============
B D                  Platypus  =============
B D                   Manatee  -------------
B D           Chinese hamster  =============
                Prairie vole  =============
                    Aardvark  =============
B D                  Elephant  =============
B D                    Tenrec  =============
B D                       Cat  =============
B D                   Megabat  =============
B D                  Bushbaby  =============
B D                       Pig  =============
  D  Chinese softshell turtle  =============
B D                   Ferret   =============
B D                   Dolphin  =============
B D                       Rat  =============
B D                     Mouse  =============
B D                     Panda  =============
               Domestic goat  =============
B D                     Sheep  =============
            Tibetan antelope  =============
             Star-nosed mole  =============
              Bactrian camel  =============
B D                    Alpaca  =============
              Pacific walrus  =============
            Black flying-fox  =============
B D          White rhinoceros  =============
B D                     Horse  =============
B D                  Squirrel  =============
B D                 Armadillo  -------------
                Weddell seal  =============
        David's myotis (bat)  =============
               Big brown bat  =============
  D          Little brown bat  =============
B D                  Marmoset  =============
B D                       Dog  =============
B D                       Cow  =============
                Killer whale  =============
B D                     Chimp  =============

Alignment block 19 of 249 in window, 56691611 - 56691614, 4 bps 
B D                     Human  aaaa-
B D                 Orangutan  aaaa-
B D                    Gibbon  aaaa-
B D       Crab-eating macaque  aaaa-
B D                 Armadillo  -atat
B D                  Hedgehog  =====
B D                Guinea pig  =====
B D                      Pika  =====
B D                    Rabbit  =====
B D                Coelacanth  =====
B D                   Gorilla  NNNNN
B D                     Shrew  =====
              Golden hamster  =====
B D              Green monkey  =====
B D                    Baboon  =====
B D                    Rhesus  =====
            Brush-tailed rat  =====
B D              Atlantic cod  =====
                 Spotted gar  =====
B D               Stickleback  =====
          Southern platyfish  =====
      Yellowbelly pufferfish  =====
B D                      Fugu  =====
B D                 Tetraodon  =====
B D                   Chicken  =====
  D              Mallard duck  =====
          Tibetan ground jay  =====
B D               Zebra finch  =====
B D                    Medaka  =====
         Pundamilia nyererei  =====
                 Zebra mbuna  =====
       Burton's mouthbreeder  =====
         Princess of Burundi  =====
B D              Nile tilapia  =====
  D            Painted turtle  =====
  D           Green seaturtle  =====
B D        American alligator  =====
  D             Scarlet macaw  =====
B D                   Opossum  =====
                  Chinchilla  =====
B D            Naked mole-rat  =====
      Lesser Egyptian jerboa  =====
  D               Rock pigeon  =====
  D       Collared flycatcher  =====
B D       Medium ground finch  =====
B D                    Lizard  =====
  D          Peregrine falcon  =====
  D              Saker falcon  =====
            Cape golden mole  =====
          Chinese tree shrew  =====
         Cape elephant shrew  =====
B D                  Platypus  =====
B D                   Manatee  -----
B D           Chinese hamster  =====
                Prairie vole  =====
                    Aardvark  =====
B D                  Elephant  =====
B D                    Tenrec  =====
B D                       Cat  =====
B D                   Megabat  =====
B D                  Bushbaby  =====
B D                       Pig  =====
  D  Chinese softshell turtle  =====
B D                   Ferret   =====
B D                   Dolphin  =====
B D                       Rat  =====
B D                     Mouse  =====
B D                     Panda  =====
               Domestic goat  =====
B D                     Sheep  =====
            Tibetan antelope  =====
             Star-nosed mole  =====
              Bactrian camel  =====
B D                    Alpaca  =====
              Pacific walrus  =====
            Black flying-fox  =====
B D          White rhinoceros  =====
B D                     Horse  =====
B D                  Squirrel  =====
                Weddell seal  =====
        David's myotis (bat)  =====
               Big brown bat  =====
  D          Little brown bat  =====
B D                  Marmoset  =====
B D                       Dog  =====
B D                       Cow  =====
                Killer whale  =====
B D                     Chimp  =====

Alignment block 20 of 249 in window, 56691615 - 56691617, 3 bps 
B D                     Human  aaa
B D                 Orangutan  aaa
B D                    Gibbon  aaa
B D       Crab-eating macaque  aaa
B D                    Rabbit  aat
         David's myotis (bat)  aat
B D                  Elephant  -aa
B D                 Armadillo  aga
B D                  Hedgehog  ===
B D                Guinea pig  ===
B D                      Pika  ===
B D                Coelacanth  ===
B D                   Gorilla  NNN
B D                     Shrew  ===
              Golden hamster  ===
B D              Green monkey  ===
B D                    Baboon  ===
B D                    Rhesus  ===
            Brush-tailed rat  ===
B D              Atlantic cod  ===
                 Spotted gar  ===
B D               Stickleback  ===
          Southern platyfish  ===
      Yellowbelly pufferfish  ===
B D                      Fugu  ===
B D                 Tetraodon  ===
B D                   Chicken  ===
  D              Mallard duck  ===
          Tibetan ground jay  ===
B D               Zebra finch  ===
B D                    Medaka  ===
         Pundamilia nyererei  ===
                 Zebra mbuna  ===
       Burton's mouthbreeder  ===
         Princess of Burundi  ===
B D              Nile tilapia  ===
  D            Painted turtle  ===
  D           Green seaturtle  ===
B D        American alligator  ===
  D             Scarlet macaw  ===
B D                   Opossum  ===
                  Chinchilla  ===
B D            Naked mole-rat  ===
      Lesser Egyptian jerboa  ===
  D               Rock pigeon  ===
  D       Collared flycatcher  ===
B D       Medium ground finch  ===
B D                    Lizard  ===
  D          Peregrine falcon  ===
  D              Saker falcon  ===
            Cape golden mole  ===
          Chinese tree shrew  ===
         Cape elephant shrew  ===
B D                  Platypus  ===
B D                   Manatee  ---
B D           Chinese hamster  ===
                Prairie vole  ===
                    Aardvark  ===
B D                    Tenrec  ===
B D                       Cat  ===
B D                   Megabat  ===
B D                  Bushbaby  ===
B D                       Pig  ===
  D  Chinese softshell turtle  ===
B D                   Ferret   ===
B D                   Dolphin  ===
B D                       Rat  ===
B D                     Mouse  ===
B D                     Panda  ===
               Domestic goat  ===
B D                     Sheep  ===
            Tibetan antelope  ===
             Star-nosed mole  ===
              Bactrian camel  ===
B D                    Alpaca  ===
              Pacific walrus  ===
            Black flying-fox  ===
B D          White rhinoceros  ===
B D                     Horse  ===
B D                  Squirrel  ===
                Weddell seal  ===
               Big brown bat  ===
  D          Little brown bat  ===
B D                  Marmoset  ===
B D                       Dog  ===
B D                       Cow  ===
                Killer whale  ===
B D                     Chimp  ===

Inserts between block 20 and 21 in window
B D                 Elephant 1bp
B D                Armadillo 4bp

Alignment block 21 of 249 in window, 56691618 - 56691625, 8 bps 
B D                     Human  aaaaaatt
B D                 Orangutan  aaaaaatt
B D                    Gibbon  aaaaaatt
B D       Crab-eating macaque  aaaaaat-
B D                    Rabbit  gaaacatt
         David's myotis (bat)  aagaaatt
B D                  Elephant  aagaagtt
B D                   Manatee  aagaaatt
B D                 Armadillo  aagaaatt
B D                  Hedgehog  ========
B D                Guinea pig  ========
B D                      Pika  ========
B D                Coelacanth  ========
B D                   Gorilla  NNNNNNNN
B D                     Shrew  ========
              Golden hamster  ========
B D              Green monkey  ========
B D                    Baboon  ========
B D                    Rhesus  ========
            Brush-tailed rat  ========
B D              Atlantic cod  ========
                 Spotted gar  ========
B D               Stickleback  ========
          Southern platyfish  ========
      Yellowbelly pufferfish  ========
B D                      Fugu  ========
B D                 Tetraodon  ========
B D                   Chicken  ========
  D              Mallard duck  ========
          Tibetan ground jay  ========
B D               Zebra finch  ========
B D                    Medaka  ========
         Pundamilia nyererei  ========
                 Zebra mbuna  ========
       Burton's mouthbreeder  ========
         Princess of Burundi  ========
B D              Nile tilapia  ========
  D            Painted turtle  ========
  D           Green seaturtle  ========
B D        American alligator  ========
  D             Scarlet macaw  ========
B D                   Opossum  ========
                  Chinchilla  ========
B D            Naked mole-rat  ========
      Lesser Egyptian jerboa  ========
  D               Rock pigeon  ========
  D       Collared flycatcher  ========
B D       Medium ground finch  ========
B D                    Lizard  ========
  D          Peregrine falcon  ========
  D              Saker falcon  ========
            Cape golden mole  ========
          Chinese tree shrew  ========
         Cape elephant shrew  ========
B D                  Platypus  ========
B D           Chinese hamster  ========
                Prairie vole  ========
                    Aardvark  ========
B D                    Tenrec  ========
B D                       Cat  ========
B D                   Megabat  ========
B D                  Bushbaby  ========
B D                       Pig  ========
  D  Chinese softshell turtle  ========
B D                   Ferret   ========
B D                   Dolphin  ========
B D                       Rat  ========
B D                     Mouse  ========
B D                     Panda  ========
               Domestic goat  ========
B D                     Sheep  ========
            Tibetan antelope  ========
             Star-nosed mole  ========
              Bactrian camel  ========
B D                    Alpaca  ========
              Pacific walrus  ========
            Black flying-fox  ========
B D          White rhinoceros  ========
B D                     Horse  ========
B D                  Squirrel  ========
                Weddell seal  ========
               Big brown bat  ========
  D          Little brown bat  ========
B D                  Marmoset  ========
B D                       Dog  ========
B D                       Cow  ========
                Killer whale  ========
B D                     Chimp  ========

Alignment block 22 of 249 in window, 56691626 - 56691676, 51 bps 
B D                     Human  ggccataaaccttaaaagagatattatgacccagcttaatataaacattac
B D                 Orangutan  ggccataaaccttaaaagagatattatgacccagcttaatataaatatcac
B D                    Gibbon  gcccataaacctttaaagagatattatgacccagcttaatataaacatcac
B D                    Rhesus  ggccataaaccttaaaagagatattatgacccagcttaatataaacatcac
B D       Crab-eating macaque  ggccataaaccttaaaagagatattatgacccagcttaatataaacatcac
B D                    Rabbit  ggccacaaaccccaaaggagacatcatgacccag-----tataaacattgt
         David's myotis (bat)  gatcacaaagtttaagggaaatattatgacctacttaaatataaacatcac
B D                  Elephant  ggccatacagcttaaaggggatatcatggcttagctaaatggaaacagcac
B D                   Manatee  ggccatacagcttaaaggagacatcatggcccagctacatataaacatcac
B D                 Armadillo  ggccatgaagcttaaagtagacatcatgacctggctaaataaaaacatcac
B D                  Hedgehog  ===================================================
B D                Guinea pig  ===================================================
B D                      Pika  ===================================================
B D                Coelacanth  ===================================================
B D                   Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                     Shrew  ===================================================
              Golden hamster  ===================================================
B D              Green monkey  ===================================================
B D                    Baboon  ===================================================
            Brush-tailed rat  ===================================================
B D              Atlantic cod  ===================================================
                 Spotted gar  ===================================================
B D               Stickleback  ===================================================
          Southern platyfish  ===================================================
      Yellowbelly pufferfish  ===================================================
B D                      Fugu  ===================================================
B D                 Tetraodon  ===================================================
B D                   Chicken  ===================================================
  D              Mallard duck  ===================================================
          Tibetan ground jay  ===================================================
B D               Zebra finch  ===================================================
B D                    Medaka  ===================================================
         Pundamilia nyererei  ===================================================
                 Zebra mbuna  ===================================================
       Burton's mouthbreeder  ===================================================
         Princess of Burundi  ===================================================
B D              Nile tilapia  ===================================================
  D            Painted turtle  ===================================================
  D           Green seaturtle  ===================================================
B D        American alligator  ===================================================
  D             Scarlet macaw  ===================================================
B D                   Opossum  ===================================================
                  Chinchilla  ===================================================
B D            Naked mole-rat  ===================================================
      Lesser Egyptian jerboa  ===================================================
  D               Rock pigeon  ===================================================
  D       Collared flycatcher  ===================================================
B D       Medium ground finch  ===================================================
B D                    Lizard  ===================================================
  D          Peregrine falcon  ===================================================
  D              Saker falcon  ===================================================
            Cape golden mole  ===================================================
          Chinese tree shrew  ===================================================
         Cape elephant shrew  ===================================================
B D                  Platypus  ===================================================
B D           Chinese hamster  ===================================================
                Prairie vole  ===================================================
                    Aardvark  ===================================================
B D                    Tenrec  ===================================================
B D                       Cat  ===================================================
B D                   Megabat  ===================================================
B D                  Bushbaby  ===================================================
B D                       Pig  ===================================================
  D  Chinese softshell turtle  ===================================================
B D                   Ferret   ===================================================
B D                   Dolphin  ===================================================
B D                       Rat  ===================================================
B D                     Mouse  ===================================================
B D                     Panda  ===================================================
               Domestic goat  ===================================================
B D                     Sheep  ===================================================
            Tibetan antelope  ===================================================
             Star-nosed mole  ===================================================
              Bactrian camel  ===================================================
B D                    Alpaca  ===================================================
              Pacific walrus  ===================================================
            Black flying-fox  ===================================================
B D          White rhinoceros  ===================================================
B D                     Horse  ===================================================
B D                  Squirrel  ===================================================
                Weddell seal  ===================================================
               Big brown bat  ===================================================
  D          Little brown bat  ===================================================
B D                  Marmoset  ===================================================
B D                       Dog  ===================================================
B D                       Cow  ===================================================
                Killer whale  ===================================================
B D                     Chimp  ===================================================

Inserts between block 22 and 23 in window
        David's myotis (bat) 2007bp

Alignment block 23 of 249 in window, 56691677 - 56691688, 12 bps 
B D                     Human  tagtagccacct
B D                 Orangutan  tagtagccacct
B D                    Gibbon  tagtagccacct
B D                    Rhesus  taggagccactt
B D       Crab-eating macaque  taggagccactt
B D                    Rabbit  agatgtccactt
B D                  Elephant  ggatagcccctt
B D                   Manatee  agatagcctctt
B D                 Armadillo  agatagccactt
B D                  Hedgehog  ============
B D                Guinea pig  ============
B D                      Pika  ============
B D                Coelacanth  ============
B D                   Gorilla  NNNNNNNNNNNN
B D                     Shrew  ============
              Golden hamster  ============
B D              Green monkey  ============
B D                    Baboon  ============
            Brush-tailed rat  ============
B D              Atlantic cod  ============
                 Spotted gar  ============
B D               Stickleback  ============
          Southern platyfish  ============
      Yellowbelly pufferfish  ============
B D                      Fugu  ============
B D                 Tetraodon  ============
B D                   Chicken  ============
  D              Mallard duck  ============
          Tibetan ground jay  ============
B D               Zebra finch  ============
B D                    Medaka  ============
         Pundamilia nyererei  ============
                 Zebra mbuna  ============
       Burton's mouthbreeder  ============
         Princess of Burundi  ============
B D              Nile tilapia  ============
  D            Painted turtle  ============
  D           Green seaturtle  ============
B D        American alligator  ============
  D             Scarlet macaw  ============
B D                   Opossum  ============
                  Chinchilla  ============
B D            Naked mole-rat  ============
      Lesser Egyptian jerboa  ============
  D               Rock pigeon  ============
  D       Collared flycatcher  ============
B D       Medium ground finch  ============
B D                    Lizard  ============
  D          Peregrine falcon  ============
  D              Saker falcon  ============
            Cape golden mole  ============
          Chinese tree shrew  ============
         Cape elephant shrew  ============
B D                  Platypus  ============
B D           Chinese hamster  ============
                Prairie vole  ============
                    Aardvark  ============
B D                    Tenrec  ============
B D                       Cat  ============
B D                   Megabat  ============
B D                  Bushbaby  ============
B D                       Pig  ============
  D  Chinese softshell turtle  ============
B D                   Ferret   ============
B D                   Dolphin  ============
B D                       Rat  ============
B D                     Mouse  ============
B D                     Panda  ============
               Domestic goat  ============
B D                     Sheep  ============
            Tibetan antelope  ============
             Star-nosed mole  ============
              Bactrian camel  ============
B D                    Alpaca  ============
              Pacific walrus  ============
            Black flying-fox  ============
B D          White rhinoceros  ============
B D                     Horse  ============
B D                  Squirrel  ============
                Weddell seal  ============
        David's myotis (bat)  ============
               Big brown bat  ============
  D          Little brown bat  ============
B D                  Marmoset  ============
B D                       Dog  ============
B D                       Cow  ============
                Killer whale  ============
B D                     Chimp  ============

Inserts between block 23 and 24 in window
B D                   Rabbit 13845bp
B D                 Elephant 2950bp
B D                  Manatee 2452bp
B D                Armadillo 253bp

Alignment block 24 of 249 in window, 56691689 - 56691791, 103 bps 
B D                     Human  gtagtcccagctacttgagaggctgaggtgggaggattgcttaagcccaagagttcaagtccagcctggg
B D                 Orangutan  gtagtcccagctacttgagaggctgaggtgggaggattgcttgagcccaagagttcaagtccagccttgg
B D                    Gibbon  gtagtcccagctacttgagaggctgaggtgggaggattgcctgagcccaagagttcaagtccagcctgga
B D                    Rhesus  gtggtccaagctacttgagaggctgaggtgggaggattgcttgagcccaagagttcaagtccagcctgag
B D       Crab-eating macaque  gtagtccaagctacttgagaggctgaggtgggaggattgcttgagcccaagagttcaagtccagcctgag
B D                  Hedgehog  ======================================================================
B D                Guinea pig  ======================================================================
B D                      Pika  ======================================================================
B D                    Rabbit  ======================================================================
B D                Coelacanth  ======================================================================
B D                   Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                     Shrew  ======================================================================
              Golden hamster  ======================================================================
B D              Green monkey  ======================================================================
B D                    Baboon  ======================================================================
            Brush-tailed rat  ======================================================================
B D              Atlantic cod  ======================================================================
                 Spotted gar  ======================================================================
B D               Stickleback  ======================================================================
          Southern platyfish  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                      Fugu  ======================================================================
B D                 Tetraodon  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
B D                    Medaka  ======================================================================
         Pundamilia nyererei  ======================================================================
                 Zebra mbuna  ======================================================================
       Burton's mouthbreeder  ======================================================================
         Princess of Burundi  ======================================================================
B D              Nile tilapia  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D        American alligator  ======================================================================
  D             Scarlet macaw  ======================================================================
B D                   Opossum  ======================================================================
                  Chinchilla  ======================================================================
B D            Naked mole-rat  ======================================================================
      Lesser Egyptian jerboa  ======================================================================
  D               Rock pigeon  ======================================================================
  D       Collared flycatcher  ======================================================================
B D       Medium ground finch  ======================================================================
B D                    Lizard  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
            Cape golden mole  ======================================================================
          Chinese tree shrew  ======================================================================
         Cape elephant shrew  ======================================================================
B D                  Platypus  ======================================================================
B D                   Manatee  ======================================================================
B D           Chinese hamster  ======================================================================
                Prairie vole  ======================================================================
                    Aardvark  ======================================================================
B D                  Elephant  ======================================================================
B D                    Tenrec  ======================================================================
B D                       Cat  ======================================================================
B D                   Megabat  ======================================================================
B D                  Bushbaby  ======================================================================
B D                       Pig  ======================================================================
  D  Chinese softshell turtle  ======================================================================
B D                   Ferret   ======================================================================
B D                   Dolphin  ======================================================================
B D                       Rat  ======================================================================
B D                     Mouse  ======================================================================
B D                     Panda  ======================================================================
               Domestic goat  ======================================================================
B D                     Sheep  ======================================================================
            Tibetan antelope  ======================================================================
             Star-nosed mole  ======================================================================
              Bactrian camel  ======================================================================
B D                    Alpaca  ======================================================================
              Pacific walrus  ======================================================================
            Black flying-fox  ======================================================================
B D          White rhinoceros  ======================================================================
B D                     Horse  ======================================================================
B D                  Squirrel  ======================================================================
B D                 Armadillo  ======================================================================
                Weddell seal  ======================================================================
        David's myotis (bat)  ======================================================================
               Big brown bat  ======================================================================
  D          Little brown bat  ======================================================================
B D                  Marmoset  ======================================================================
B D                       Dog  ======================================================================
B D                       Cow  ======================================================================
                Killer whale  ======================================================================
B D                     Chimp  ======================================================================

                        Human  caacgtagggagaccctgtctttgaaaaaataa
                    Orangutan  caacggagggagatcctgtctttgaaaaaataa
                       Gibbon  caatgtagggagaccctgtctttgaaaaaataa
                       Rhesus  caatgtagggagaccctgtctttgaaaaaataa
          Crab-eating macaque  caatgtagggagaccctgtctttgaaaaaataa
                     Hedgehog  =================================
                   Guinea pig  =================================
                         Pika  =================================
                       Rabbit  =================================
                   Coelacanth  =================================
                      Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                        Shrew  =================================
               Golden hamster  =================================
                 Green monkey  =================================
                       Baboon  =================================
             Brush-tailed rat  =================================
                 Atlantic cod  =================================
                  Spotted gar  =================================
                  Stickleback  =================================
           Southern platyfish  =================================
       Yellowbelly pufferfish  =================================
                         Fugu  =================================
                    Tetraodon  =================================
                      Chicken  =================================
                 Mallard duck  =================================
           Tibetan ground jay  =================================
                  Zebra finch  =================================
                       Medaka  =================================
          Pundamilia nyererei  =================================
                  Zebra mbuna  =================================
        Burton's mouthbreeder  =================================
          Princess of Burundi  =================================
                 Nile tilapia  =================================
               Painted turtle  =================================
              Green seaturtle  =================================
           American alligator  =================================
                Scarlet macaw  =================================
                      Opossum  =================================
                   Chinchilla  =================================
               Naked mole-rat  =================================
       Lesser Egyptian jerboa  =================================
                  Rock pigeon  =================================
          Collared flycatcher  =================================
          Medium ground finch  =================================
                       Lizard  =================================
             Peregrine falcon  =================================
                 Saker falcon  =================================
             Cape golden mole  =================================
           Chinese tree shrew  =================================
          Cape elephant shrew  =================================
                     Platypus  =================================
                      Manatee  =================================
              Chinese hamster  =================================
                 Prairie vole  =================================
                     Aardvark  =================================
                     Elephant  =================================
                       Tenrec  =================================
                          Cat  =================================
                      Megabat  =================================
                     Bushbaby  =================================
                          Pig  =================================
     Chinese softshell turtle  =================================
                      Ferret   =================================
                      Dolphin  =================================
                          Rat  =================================
                        Mouse  =================================
                        Panda  =================================
                Domestic goat  =================================
                        Sheep  =================================
             Tibetan antelope  =================================
              Star-nosed mole  =================================
               Bactrian camel  =================================
                       Alpaca  =================================
               Pacific walrus  =================================
             Black flying-fox  =================================
             White rhinoceros  =================================
                        Horse  =================================
                     Squirrel  =================================
                    Armadillo  =================================
                 Weddell seal  =================================
         David's myotis (bat)  =================================
                Big brown bat  =================================
             Little brown bat  =================================
                     Marmoset  =================================
                          Dog  =================================
                          Cow  =================================
                 Killer whale  =================================
                        Chimp  =================================

Inserts between block 24 and 25 in window
B D                   Rhesus 271bp

Alignment block 25 of 249 in window, 56691792 - 56691806, 15 bps 
B D                     Human  ---att--tttttttttttt
B D                 Orangutan  ---att--tttttttttttt
B D                    Gibbon  --------tttttttttttt
B D       Crab-eating macaque  gttgttggtttttttttttt
B D                  Hedgehog  ====================
B D                Guinea pig  ====================
B D                      Pika  ====================
B D                    Rabbit  ====================
B D                Coelacanth  ====================
B D                   Gorilla  NNNNNNNNNNNNNNNNNNNN
B D                     Shrew  ====================
              Golden hamster  ====================
B D              Green monkey  ====================
B D                    Baboon  ====================
B D                    Rhesus  ====================
            Brush-tailed rat  ====================
B D              Atlantic cod  ====================
                 Spotted gar  ====================
B D               Stickleback  ====================
          Southern platyfish  ====================
      Yellowbelly pufferfish  ====================
B D                      Fugu  ====================
B D                 Tetraodon  ====================
B D                   Chicken  ====================
  D              Mallard duck  ====================
          Tibetan ground jay  ====================
B D               Zebra finch  ====================
B D                    Medaka  ====================
         Pundamilia nyererei  ====================
                 Zebra mbuna  ====================
       Burton's mouthbreeder  ====================
         Princess of Burundi  ====================
B D              Nile tilapia  ====================
  D            Painted turtle  ====================
  D           Green seaturtle  ====================
B D        American alligator  ====================
  D             Scarlet macaw  ====================
B D                   Opossum  ====================
                  Chinchilla  ====================
B D            Naked mole-rat  ====================
      Lesser Egyptian jerboa  ====================
  D               Rock pigeon  ====================
  D       Collared flycatcher  ====================
B D       Medium ground finch  ====================
B D                    Lizard  ====================
  D          Peregrine falcon  ====================
  D              Saker falcon  ====================
            Cape golden mole  ====================
          Chinese tree shrew  ====================
         Cape elephant shrew  ====================
B D                  Platypus  ====================
B D                   Manatee  ====================
B D           Chinese hamster  ====================
                Prairie vole  ====================
                    Aardvark  ====================
B D                  Elephant  ====================
B D                    Tenrec  ====================
B D                       Cat  ====================
B D                   Megabat  ====================
B D                  Bushbaby  ====================
B D                       Pig  ====================
  D  Chinese softshell turtle  ====================
B D                   Ferret   ====================
B D                   Dolphin  ====================
B D                       Rat  ====================
B D                     Mouse  ====================
B D                     Panda  ====================
               Domestic goat  ====================
B D                     Sheep  ====================
            Tibetan antelope  ====================
             Star-nosed mole  ====================
              Bactrian camel  ====================
B D                    Alpaca  ====================
              Pacific walrus  ====================
            Black flying-fox  ====================
B D          White rhinoceros  ====================
B D                     Horse  ====================
B D                  Squirrel  ====================
B D                 Armadillo  ====================
                Weddell seal  ====================
        David's myotis (bat)  ====================
               Big brown bat  ====================
  D          Little brown bat  ====================
B D                  Marmoset  ====================
B D                       Dog  ====================
B D                       Cow  ====================
                Killer whale  ====================
B D                     Chimp  ====================

Inserts between block 25 and 26 in window
B D      Crab-eating macaque 749bp

Alignment block 26 of 249 in window, 56691807 - 56691849, 43 bps 
B D                     Human  --agatggagt----ctctgtcgcccaggctggaatgcagtggcacgat
B D                 Orangutan  tgagatggagtctcactctgtcgcccaggctggaatgcagtggcacgat
B D                    Gibbon  cgagatggagtctcactctgttgcccaggctggaattcagtggcacgat
B D                  Hedgehog  =================================================
B D                Guinea pig  =================================================
B D                      Pika  =================================================
B D                    Rabbit  =================================================
B D                Coelacanth  =================================================
B D                   Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                     Shrew  =================================================
              Golden hamster  =================================================
B D              Green monkey  =================================================
B D                    Baboon  =================================================
B D       Crab-eating macaque  =================================================
B D                    Rhesus  =================================================
            Brush-tailed rat  =================================================
B D              Atlantic cod  =================================================
                 Spotted gar  =================================================
B D               Stickleback  =================================================
          Southern platyfish  =================================================
      Yellowbelly pufferfish  =================================================
B D                      Fugu  =================================================
B D                 Tetraodon  =================================================
B D                   Chicken  =================================================
  D              Mallard duck  =================================================
          Tibetan ground jay  =================================================
B D               Zebra finch  =================================================
B D                    Medaka  =================================================
         Pundamilia nyererei  =================================================
                 Zebra mbuna  =================================================
       Burton's mouthbreeder  =================================================
         Princess of Burundi  =================================================
B D              Nile tilapia  =================================================
  D            Painted turtle  =================================================
  D           Green seaturtle  =================================================
B D        American alligator  =================================================
  D             Scarlet macaw  =================================================
B D                   Opossum  =================================================
                  Chinchilla  =================================================
B D            Naked mole-rat  =================================================
      Lesser Egyptian jerboa  =================================================
  D               Rock pigeon  =================================================
  D       Collared flycatcher  =================================================
B D       Medium ground finch  =================================================
B D                    Lizard  =================================================
  D          Peregrine falcon  =================================================
  D              Saker falcon  =================================================
            Cape golden mole  =================================================
          Chinese tree shrew  =================================================
         Cape elephant shrew  =================================================
B D                  Platypus  =================================================
B D                   Manatee  =================================================
B D           Chinese hamster  =================================================
                Prairie vole  =================================================
                    Aardvark  =================================================
B D                  Elephant  =================================================
B D                    Tenrec  =================================================
B D                       Cat  =================================================
B D                   Megabat  =================================================
B D                  Bushbaby  =================================================
B D                       Pig  =================================================
  D  Chinese softshell turtle  =================================================
B D                   Ferret   =================================================
B D                   Dolphin  =================================================
B D                       Rat  =================================================
B D                     Mouse  =================================================
B D                     Panda  =================================================
               Domestic goat  =================================================
B D                     Sheep  =================================================
            Tibetan antelope  =================================================
             Star-nosed mole  =================================================
              Bactrian camel  =================================================
B D                    Alpaca  =================================================
              Pacific walrus  =================================================
            Black flying-fox  =================================================
B D          White rhinoceros  =================================================
B D                     Horse  =================================================
B D                  Squirrel  =================================================
B D                 Armadillo  =================================================
                Weddell seal  =================================================
        David's myotis (bat)  =================================================
               Big brown bat  =================================================
  D          Little brown bat  =================================================
B D                  Marmoset  =================================================
B D                       Dog  =================================================
B D                       Cow  =================================================
                Killer whale  =================================================
B D                     Chimp  =================================================

Inserts between block 26 and 27 in window
B D                Orangutan 2794bp

Alignment block 27 of 249 in window, 56691850 - 56691850, 1 bps 
B D                     Human  c
B D                    Gibbon  c
B D                  Hedgehog  =
B D                Guinea pig  =
B D                      Pika  =
B D                    Rabbit  =
B D                Coelacanth  =
B D                   Gorilla  N
B D                     Shrew  =
              Golden hamster  =
B D              Green monkey  =
B D                    Baboon  =
B D       Crab-eating macaque  =
B D                    Rhesus  =
            Brush-tailed rat  =
B D              Atlantic cod  =
                 Spotted gar  =
B D               Stickleback  =
          Southern platyfish  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                 Tetraodon  =
B D                   Chicken  =
  D              Mallard duck  =
          Tibetan ground jay  =
B D               Zebra finch  =
B D                    Medaka  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D              Nile tilapia  =
  D            Painted turtle  =
  D           Green seaturtle  =
B D        American alligator  =
  D             Scarlet macaw  =
B D                   Opossum  =
                  Chinchilla  =
B D            Naked mole-rat  =
      Lesser Egyptian jerboa  =
  D               Rock pigeon  =
  D       Collared flycatcher  =
B D       Medium ground finch  =
B D                    Lizard  =
  D          Peregrine falcon  =
  D              Saker falcon  =
            Cape golden mole  =
          Chinese tree shrew  =
         Cape elephant shrew  =
B D                  Platypus  =
B D                   Manatee  =
B D           Chinese hamster  =
                Prairie vole  =
                    Aardvark  =
B D                  Elephant  =
B D                    Tenrec  =
B D                       Cat  =
B D                   Megabat  =
B D                  Bushbaby  =
B D                       Pig  =
  D  Chinese softshell turtle  =
B D                   Ferret   =
B D                   Dolphin  =
B D                       Rat  =
B D                     Mouse  =
B D                 Orangutan  =
B D                     Panda  =
               Domestic goat  =
B D                     Sheep  =
            Tibetan antelope  =
             Star-nosed mole  =
              Bactrian camel  =
B D                    Alpaca  =
              Pacific walrus  =
            Black flying-fox  =
B D          White rhinoceros  =
B D                     Horse  =
B D                  Squirrel  =
B D                 Armadillo  =
                Weddell seal  =
        David's myotis (bat)  =
               Big brown bat  =
  D          Little brown bat  =
B D                  Marmoset  =
B D                       Dog  =
B D                       Cow  =
                Killer whale  =
B D                     Chimp  =

Alignment block 28 of 249 in window, 56691851 - 56691923, 73 bps 
B D                     Human  tctttttagtagagacggggtttcaccatgttcaccaggctggtcttgaactcctgacctcaggtgatct
B D                    Gibbon  tctttttagtagagacggagtttcatcacgttcaccaggctgatcttgaactcctgacctcaggtgatct
B D       Crab-eating macaque  tttttttagtagagacggggtttcaccatgttggccaggctggtcttgaactcctgacctcaggtggtct
B D                  Hedgehog  ======================================================================
B D                Guinea pig  ======================================================================
B D                      Pika  ======================================================================
B D                    Rabbit  ======================================================================
B D                Coelacanth  ======================================================================
B D                   Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                     Shrew  ======================================================================
              Golden hamster  ======================================================================
B D              Green monkey  ======================================================================
B D                    Baboon  ======================================================================
B D                    Rhesus  ======================================================================
            Brush-tailed rat  ======================================================================
B D              Atlantic cod  ======================================================================
                 Spotted gar  ======================================================================
B D               Stickleback  ======================================================================
          Southern platyfish  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                      Fugu  ======================================================================
B D                 Tetraodon  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
B D                    Medaka  ======================================================================
         Pundamilia nyererei  ======================================================================
                 Zebra mbuna  ======================================================================
       Burton's mouthbreeder  ======================================================================
         Princess of Burundi  ======================================================================
B D              Nile tilapia  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D        American alligator  ======================================================================
  D             Scarlet macaw  ======================================================================
B D                   Opossum  ======================================================================
                  Chinchilla  ======================================================================
B D            Naked mole-rat  ======================================================================
      Lesser Egyptian jerboa  ======================================================================
  D               Rock pigeon  ======================================================================
  D       Collared flycatcher  ======================================================================
B D       Medium ground finch  ======================================================================
B D                    Lizard  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
            Cape golden mole  ======================================================================
          Chinese tree shrew  ======================================================================
         Cape elephant shrew  ======================================================================
B D                  Platypus  ======================================================================
B D                   Manatee  ======================================================================
B D           Chinese hamster  ======================================================================
                Prairie vole  ======================================================================
                    Aardvark  ======================================================================
B D                  Elephant  ======================================================================
B D                    Tenrec  ======================================================================
B D                       Cat  ======================================================================
B D                   Megabat  ======================================================================
B D                  Bushbaby  ======================================================================
B D                       Pig  ======================================================================
  D  Chinese softshell turtle  ======================================================================
B D                   Ferret   ======================================================================
B D                   Dolphin  ======================================================================
B D                       Rat  ======================================================================
B D                     Mouse  ======================================================================
B D                 Orangutan  ======================================================================
B D                     Panda  ======================================================================
               Domestic goat  ======================================================================
B D                     Sheep  ======================================================================
            Tibetan antelope  ======================================================================
             Star-nosed mole  ======================================================================
              Bactrian camel  ======================================================================
B D                    Alpaca  ======================================================================
              Pacific walrus  ======================================================================
            Black flying-fox  ======================================================================
B D          White rhinoceros  ======================================================================
B D                     Horse  ======================================================================
B D                  Squirrel  ======================================================================
B D                 Armadillo  ======================================================================
                Weddell seal  ======================================================================
        David's myotis (bat)  ======================================================================
               Big brown bat  ======================================================================
  D          Little brown bat  ======================================================================
B D                  Marmoset  ======================================================================
B D                       Dog  ======================================================================
B D                       Cow  ======================================================================
                Killer whale  ======================================================================
B D                     Chimp  ======================================================================

                        Human  gcc
                       Gibbon  gcc
          Crab-eating macaque  gcc
                     Hedgehog  ===
                   Guinea pig  ===
                         Pika  ===
                       Rabbit  ===
                   Coelacanth  ===
                      Gorilla  NNN
                        Shrew  ===
               Golden hamster  ===
                 Green monkey  ===
                       Baboon  ===
                       Rhesus  ===
             Brush-tailed rat  ===
                 Atlantic cod  ===
                  Spotted gar  ===
                  Stickleback  ===
           Southern platyfish  ===
       Yellowbelly pufferfish  ===
                         Fugu  ===
                    Tetraodon  ===
                      Chicken  ===
                 Mallard duck  ===
           Tibetan ground jay  ===
                  Zebra finch  ===
                       Medaka  ===
          Pundamilia nyererei  ===
                  Zebra mbuna  ===
        Burton's mouthbreeder  ===
          Princess of Burundi  ===
                 Nile tilapia  ===
               Painted turtle  ===
              Green seaturtle  ===
           American alligator  ===
                Scarlet macaw  ===
                      Opossum  ===
                   Chinchilla  ===
               Naked mole-rat  ===
       Lesser Egyptian jerboa  ===
                  Rock pigeon  ===
          Collared flycatcher  ===
          Medium ground finch  ===
                       Lizard  ===
             Peregrine falcon  ===
                 Saker falcon  ===
             Cape golden mole  ===
           Chinese tree shrew  ===
          Cape elephant shrew  ===
                     Platypus  ===
                      Manatee  ===
              Chinese hamster  ===
                 Prairie vole  ===
                     Aardvark  ===
                     Elephant  ===
                       Tenrec  ===
                          Cat  ===
                      Megabat  ===
                     Bushbaby  ===
                          Pig  ===
     Chinese softshell turtle  ===
                      Ferret   ===
                      Dolphin  ===
                          Rat  ===
                        Mouse  ===
                    Orangutan  ===
                        Panda  ===
                Domestic goat  ===
                        Sheep  ===
             Tibetan antelope  ===
              Star-nosed mole  ===
               Bactrian camel  ===
                       Alpaca  ===
               Pacific walrus  ===
             Black flying-fox  ===
             White rhinoceros  ===
                        Horse  ===
                     Squirrel  ===
                    Armadillo  ===
                 Weddell seal  ===
         David's myotis (bat)  ===
                Big brown bat  ===
             Little brown bat  ===
                     Marmoset  ===
                          Dog  ===
                          Cow  ===
                 Killer whale  ===
                        Chimp  ===

Alignment block 29 of 249 in window, 56691924 - 56691973, 50 bps 
B D                     Human  tgcctcggcctcccaaagtgctgggattacagacgtgagccactgcgccc
B D                    Gibbon  cacctcggcctcccaaagtgctgggattacagacgcgagccactgcgccc
B D                    Rhesus  tgcctcagcctcccaaagtgctgggattacagacgtgagccactgtgccc
B D       Crab-eating macaque  tgcctcagcctcccaaagtgctgggattacagacgtgagccactgtgccc
B D                  Hedgehog  ==================================================
B D                Guinea pig  ==================================================
B D                      Pika  ==================================================
B D                    Rabbit  ==================================================
B D                Coelacanth  ==================================================
B D                   Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                     Shrew  ==================================================
              Golden hamster  ==================================================
B D              Green monkey  ==================================================
B D                    Baboon  ==================================================
            Brush-tailed rat  ==================================================
B D              Atlantic cod  ==================================================
                 Spotted gar  ==================================================
B D               Stickleback  ==================================================
          Southern platyfish  ==================================================
      Yellowbelly pufferfish  ==================================================
B D                      Fugu  ==================================================
B D                 Tetraodon  ==================================================
B D                   Chicken  ==================================================
  D              Mallard duck  ==================================================
          Tibetan ground jay  ==================================================
B D               Zebra finch  ==================================================
B D                    Medaka  ==================================================
         Pundamilia nyererei  ==================================================
                 Zebra mbuna  ==================================================
       Burton's mouthbreeder  ==================================================
         Princess of Burundi  ==================================================
B D              Nile tilapia  ==================================================
  D            Painted turtle  ==================================================
  D           Green seaturtle  ==================================================
B D        American alligator  ==================================================
  D             Scarlet macaw  ==================================================
B D                   Opossum  ==================================================
                  Chinchilla  ==================================================
B D            Naked mole-rat  ==================================================
      Lesser Egyptian jerboa  ==================================================
  D               Rock pigeon  ==================================================
  D       Collared flycatcher  ==================================================
B D       Medium ground finch  ==================================================
B D                    Lizard  ==================================================
  D          Peregrine falcon  ==================================================
  D              Saker falcon  ==================================================
            Cape golden mole  ==================================================
          Chinese tree shrew  ==================================================
         Cape elephant shrew  ==================================================
B D                  Platypus  ==================================================
B D                   Manatee  ==================================================
B D           Chinese hamster  ==================================================
                Prairie vole  ==================================================
                    Aardvark  ==================================================
B D                  Elephant  ==================================================
B D                    Tenrec  ==================================================
B D                       Cat  ==================================================
B D                   Megabat  ==================================================
B D                  Bushbaby  ==================================================
B D                       Pig  ==================================================
  D  Chinese softshell turtle  ==================================================
B D                   Ferret   ==================================================
B D                   Dolphin  ==================================================
B D                       Rat  ==================================================
B D                     Mouse  ==================================================
B D                 Orangutan  ==================================================
B D                     Panda  ==================================================
               Domestic goat  ==================================================
B D                     Sheep  ==================================================
            Tibetan antelope  ==================================================
             Star-nosed mole  ==================================================
              Bactrian camel  ==================================================
B D                    Alpaca  ==================================================
              Pacific walrus  ==================================================
            Black flying-fox  ==================================================
B D          White rhinoceros  ==================================================
B D                     Horse  ==================================================
B D                  Squirrel  ==================================================
B D                 Armadillo  ==================================================
                Weddell seal  ==================================================
        David's myotis (bat)  ==================================================
               Big brown bat  ==================================================
  D          Little brown bat  ==================================================
B D                  Marmoset  ==================================================
B D                       Dog  ==================================================
B D                       Cow  ==================================================
                Killer whale  ==================================================
B D                     Chimp  ==================================================

Alignment block 30 of 249 in window, 56691974 - 56692104, 131 bps 
B D                     Human  agcaaataaaatcatttttaaaattacttatgttttaggccaagcatggtggctcatgcctgtaatgcca
B D                    Gibbon  ggtaaataaaatcatttttaaaattacttatgttttatgccaagcatggtggctcatacctgtaatgcca
B D                    Rhesus  ggcaaataaaatcattttttaaattacttatgttttaggccatgcatggtggctcatgcctgtaatccca
B D       Crab-eating macaque  ggcaaataaaatcattttttaaattacttatgttttaggccatgcatggtggctcatgcctgtaatccca
B D                  Marmoset  aataaataaaataattttaaaaattacttatgttttaggccaagcatggtgactcacgcctgtaatttca
B D                  Hedgehog  ======================================================================
B D                Guinea pig  ======================================================================
B D                      Pika  ======================================================================
B D                    Rabbit  ======================================================================
B D                Coelacanth  ======================================================================
B D                   Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                     Shrew  ======================================================================
              Golden hamster  ======================================================================
B D              Green monkey  ======================================================================
B D                    Baboon  ======================================================================
            Brush-tailed rat  ======================================================================
B D              Atlantic cod  ======================================================================
                 Spotted gar  ======================================================================
B D               Stickleback  ======================================================================
          Southern platyfish  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                      Fugu  ======================================================================
B D                 Tetraodon  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
B D                    Medaka  ======================================================================
         Pundamilia nyererei  ======================================================================
                 Zebra mbuna  ======================================================================
       Burton's mouthbreeder  ======================================================================
         Princess of Burundi  ======================================================================
B D              Nile tilapia  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D        American alligator  ======================================================================
  D             Scarlet macaw  ======================================================================
B D                   Opossum  ======================================================================
                  Chinchilla  ======================================================================
B D            Naked mole-rat  ======================================================================
      Lesser Egyptian jerboa  ======================================================================
  D               Rock pigeon  ======================================================================
  D       Collared flycatcher  ======================================================================
B D       Medium ground finch  ======================================================================
B D                    Lizard  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
            Cape golden mole  ======================================================================
          Chinese tree shrew  ======================================================================
         Cape elephant shrew  ======================================================================
B D                  Platypus  ======================================================================
B D                   Manatee  ======================================================================
B D           Chinese hamster  ======================================================================
                Prairie vole  ======================================================================
                    Aardvark  ======================================================================
B D                  Elephant  ======================================================================
B D                    Tenrec  ======================================================================
B D                       Cat  ======================================================================
B D                   Megabat  ======================================================================
B D                  Bushbaby  ======================================================================
B D                       Pig  ======================================================================
  D  Chinese softshell turtle  ======================================================================
B D                   Ferret   ======================================================================
B D                   Dolphin  ======================================================================
B D                       Rat  ======================================================================
B D                     Mouse  ======================================================================
B D                 Orangutan  ======================================================================
B D                     Panda  ======================================================================
               Domestic goat  ======================================================================
B D                     Sheep  ======================================================================
            Tibetan antelope  ======================================================================
             Star-nosed mole  ======================================================================
              Bactrian camel  ======================================================================
B D                    Alpaca  ======================================================================
              Pacific walrus  ======================================================================
            Black flying-fox  ======================================================================
B D          White rhinoceros  ======================================================================
B D                     Horse  ======================================================================
B D                  Squirrel  ======================================================================
B D                 Armadillo  ======================================================================
                Weddell seal  ======================================================================
        David's myotis (bat)  ======================================================================
               Big brown bat  ======================================================================
  D          Little brown bat  ======================================================================
B D                       Dog  ======================================================================
B D                       Cow  ======================================================================
                Killer whale  ======================================================================
B D                     Chimp  ======================================================================

                        Human  acattttgggaggccaaggtgggaggatgtcttgaggccaggagttcaaaacctgcctggg
                       Gibbon  acattttgggaagccaaggtgggaggatgtcttgaggccaggagttcaaaacctgcctggg
                       Rhesus  acattttgggaggtgaaggtgggaggatggcttgaggccaggagttcaaaacctgcctggg
          Crab-eating macaque  acattttgggaggtgaaggtgggaggatggcttgaggccaggagttcaaaacctgcctggg
                     Marmoset  acattttgggaggccaaggtgggaggatggtttgaggccaggagttcaaaacctgcctcgg
                     Hedgehog  =============================================================
                   Guinea pig  =============================================================
                         Pika  =============================================================
                       Rabbit  =============================================================
                   Coelacanth  =============================================================
                      Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                        Shrew  =============================================================
               Golden hamster  =============================================================
                 Green monkey  =============================================================
                       Baboon  =============================================================
             Brush-tailed rat  =============================================================
                 Atlantic cod  =============================================================
                  Spotted gar  =============================================================
                  Stickleback  =============================================================
           Southern platyfish  =============================================================
       Yellowbelly pufferfish  =============================================================
                         Fugu  =============================================================
                    Tetraodon  =============================================================
                      Chicken  =============================================================
                 Mallard duck  =============================================================
           Tibetan ground jay  =============================================================
                  Zebra finch  =============================================================
                       Medaka  =============================================================
          Pundamilia nyererei  =============================================================
                  Zebra mbuna  =============================================================
        Burton's mouthbreeder  =============================================================
          Princess of Burundi  =============================================================
                 Nile tilapia  =============================================================
               Painted turtle  =============================================================
              Green seaturtle  =============================================================
           American alligator  =============================================================
                Scarlet macaw  =============================================================
                      Opossum  =============================================================
                   Chinchilla  =============================================================
               Naked mole-rat  =============================================================
       Lesser Egyptian jerboa  =============================================================
                  Rock pigeon  =============================================================
          Collared flycatcher  =============================================================
          Medium ground finch  =============================================================
                       Lizard  =============================================================
             Peregrine falcon  =============================================================
                 Saker falcon  =============================================================
             Cape golden mole  =============================================================
           Chinese tree shrew  =============================================================
          Cape elephant shrew  =============================================================
                     Platypus  =============================================================
                      Manatee  =============================================================
              Chinese hamster  =============================================================
                 Prairie vole  =============================================================
                     Aardvark  =============================================================
                     Elephant  =============================================================
                       Tenrec  =============================================================
                          Cat  =============================================================
                      Megabat  =============================================================
                     Bushbaby  =============================================================
                          Pig  =============================================================
     Chinese softshell turtle  =============================================================
                      Ferret   =============================================================
                      Dolphin  =============================================================
                          Rat  =============================================================
                        Mouse  =============================================================
                    Orangutan  =============================================================
                        Panda  =============================================================
                Domestic goat  =============================================================
                        Sheep  =============================================================
             Tibetan antelope  =============================================================
              Star-nosed mole  =============================================================
               Bactrian camel  =============================================================
                       Alpaca  =============================================================
               Pacific walrus  =============================================================
             Black flying-fox  =============================================================
             White rhinoceros  =============================================================
                        Horse  =============================================================
                     Squirrel  =============================================================
                    Armadillo  =============================================================
                 Weddell seal  =============================================================
         David's myotis (bat)  =============================================================
                Big brown bat  =============================================================
             Little brown bat  =============================================================
                          Dog  =============================================================
                          Cow  =============================================================
                 Killer whale  =============================================================
                        Chimp  =============================================================

Inserts between block 30 and 31 in window
B D                   Gibbon 102bp

Alignment block 31 of 249 in window, 56692105 - 56692171, 67 bps 
B D                     Human  tggccatgagcagtgattcacacctgtaatcccagcactttgggaggctgaggcaggtagatcatct
B D                    Rhesus  tggccgcgaacagtgattcacacctgtaatcccagcactttgggaggccgaggcaggtagatcatct
B D       Crab-eating macaque  tggccgcgaacagtgattcacacctgtaatccccgcactttgggaggccgaggcaggtagatcatct
B D                  Marmoset  tggctgcatgcaat-actaatacctgtaatcccagcattttgggaggctgaagtgggtggatcatct
B D                  Hedgehog  ===================================================================
B D                Guinea pig  ===================================================================
B D                      Pika  ===================================================================
B D                    Rabbit  ===================================================================
B D                Coelacanth  ===================================================================
B D                   Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                     Shrew  ===================================================================
              Golden hamster  ===================================================================
B D              Green monkey  ===================================================================
B D                    Baboon  ===================================================================
            Brush-tailed rat  ===================================================================
B D              Atlantic cod  ===================================================================
B D                    Gibbon  ===================================================================
                 Spotted gar  ===================================================================
B D               Stickleback  ===================================================================
          Southern platyfish  ===================================================================
      Yellowbelly pufferfish  ===================================================================
B D                      Fugu  ===================================================================
B D                 Tetraodon  ===================================================================
B